PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_21390V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 843aa    MW: 91645.7 Da    PI: 5.7317
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_21390V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019247269123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++C++ F +  +L+ H + H
  Pp3c19_21390V3.2.p 247 YRCGICNEDFESAKSLNLHKKYH 269
                         9*******************998 PP
2zf-C2H2157.1e-05318337221
                         EETTTTEEESSHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                         +C+ Cgk Fs++  L  H+r
  Pp3c19_21390V3.2.p 318 PCTECGKEFSSWKALFGHMR 337
                         5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.91247269IPR007087Zinc finger, C2H2
PfamPF139120.0085247271IPR007087Zinc finger, C2H2
SuperFamilySSF576675.02E-9247269No hitNo description
SMARTSM003550.0089247269IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
SuperFamilySSF576675.02E-9312339No hitNo description
SMARTSM003550.0052317339IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18317344IPR007087Zinc finger, C2H2
PROSITE patternPS000280319339IPR007087Zinc finger, C2H2
PfamPF139124.9E-8319341IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4319339IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.22E-6574596No hitNo description
PfamPF139123.5E-8574598IPR007087Zinc finger, C2H2
SMARTSM003550.61574596IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93574601IPR007087Zinc finger, C2H2
PROSITE patternPS000280576596IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-6665692No hitNo description
PfamPF139125.2E-13669694IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473670697IPR007087Zinc finger, C2H2
SMARTSM003550.43670692IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280672692IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MTLTDGVESS GGKEALEKAD RQLDWVDRAK DQASGGADQE REMDLGQEPG ANLGADNACK  60
SGPSGVSKME EENYGVSAEG MEIEPREAAK ASVELESIEV VKAEFVDLIE RESGTEDYCH  120
KAEVSSSRGN GKTTIQDAES PKHEISLDRP LSCPRRSDTP RLSLRRVNSA KTRSSSLSSQ  180
RSVKGSPNQD IHSGATSDSK VNLGLRGTRK RADDAEELRQ SSSSEELNGD GNRDREVDED  240
EVDGTGYRCG ICNEDFESAK SLNLHKKYHP QYTLRRNPKR SRKLMDQEYT VEPGVAAPVQ  300
ALAPTKKTSS TSEEFPKPCT ECGKEFSSWK ALFGHMRCHP EREWRGIQPP AEKSNPGGQG  360
SGQHAGGFGN LTSFRRKKPS PAPHIPPSPA PLAVFLPEDV NEKSGSLDSR RAPAAGKASD  420
NESDTESIEA AYMSNGDRHT VMGWQTGKRS KRSRQTHRSL DAVNDAKKEL SNCRDSAANM  480
AESNDMIEAL MLLQAANRSR GRLTPTYTPE SHGSKSRSKS RTPESGVEAS TEELSKRGEK  540
IKLEVEAASL CGDTEEGGDD FDAGEQGSSA RSKYECATCK RQFKSHQALG GHRASHKKVK  600
GCFARTSVNE GGAHEQSLEF MDAEDEEVLK SEEQLPNELQ ETSHNSEEDK PCCLPDNEEM  660
LNAARKTKAH ECSICHRVFN SGQALGGHKR CHWGGTGSGT PGSSEATSAK LVQSGQRNKP  720
LKESVLDLNL PAPECLEEEM AQHLEAGASS INYMAVPSLN FFNIMNNPSR SAYRNKVEQG  780
QHAAFLQGEE SSTDNQVENG MEGINQFTNF ERAYGPLDTI TVHQKPHVAS MALVTGLTPT  840
SA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403370.10.0uncharacterized protein LOC112295722
TrEMBLA0A2K1IZ880.0A0A2K1IZ88_PHYPA; Uncharacterized protein
STRINGPP1S254_44V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-21C2H2-like zinc finger protein