PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_19610V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 266aa MW: 27453.8 Da PI: 8.7421 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.4 | 1.6e-45 | 31 | 130 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp ++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++ql+ Pp3c19_19610V3.2.p 31 PCAACKFLRRKCTSECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPMHQREDAVNSLAYEADARVKDPVYGCVGAISVLQRQVAQLQ 121 7****************************************************************************************** PP DUF260 92 aelallkee 100 +ela +++ Pp3c19_19610V3.2.p 122 NELAIAHSD 130 ****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.125 | 30 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-44 | 31 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MRVVVQERID GFRDALSTTM KRGMASSSSS PCAACKFLRR KCTSECVFAP YFPPDQPHKF 60 ANVHKIFGAS NITKLLNELP MHQREDAVNS LAYEADARVK DPVYGCVGAI SVLQRQVAQL 120 QNELAIAHSD LARYASAGMV VPSVGQGGAS SSLGVGMNLS RGQPNREQML TREQLMDLAR 180 DPSHLSREHL MELARGGGGS YETLQALGLS GALGPLGPFP SNPRPGGESG NRSGGEGGNG 240 GGGGRGGGGG GGASGSNTGG QVTSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-60 | 30 | 136 | 10 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-60 | 30 | 136 | 10 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 250 | GGRGGGGGG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356367.1 | 0.0 | protein LATERAL ORGAN BOUNDARIES-like isoform X1 | ||||
Swissprot | Q9FML4 | 9e-60 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A2K1IZ19 | 0.0 | A0A2K1IZ19_PHYPA; Uncharacterized protein | ||||
STRING | PP1S170_93V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 6e-60 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_19610V3.2.p |
Publications ? help Back to Top | |||
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