PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c19_19610V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LBD

Protein Properties

Length: 266aa MW: 27453.8 Da PI: 8.7421

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c19_19610V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.4	1.6e-45	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp ++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++ql+ Pp3c19_19610V3.2.p 31 PCAACKFLRRKCTSECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPMHQREDAVNSLAYEADARVKDPVYGCVGAISVLQRQVAQLQ 121 7**************************************************************************************** PP DUF260 92 aelallkee 100 +ela +++ Pp3c19_19610V3.2.p 122 NELAIAHSD 130 **99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.125	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-44	31	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MRVVVQERID GFRDALSTTM KRGMASSSSS PCAACKFLRR KCTSECVFAP YFPPDQPHKF 60 ANVHKIFGAS NITKLLNELP MHQREDAVNS LAYEADARVK DPVYGCVGAI SVLQRQVAQL 120 QNELAIAHSD LARYASAGMV VPSVGQGGAS SSLGVGMNLS RGQPNREQML TREQLMDLAR 180 DPSHLSREHL MELARGGGGS YETLQALGLS GALGPLGPFP SNPRPGGESG NRSGGEGGNG 240 GGGGRGGGGG GGASGSNTGG QVTSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-60	30	136	10	116	LOB family transfactor Ramosa2.1
5ly0_B	2e-60	30	136	10	116	LOB family transfactor Ramosa2.1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	250	GGRGGGGGG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269\|PubMed:12068116}.

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024356367.1	0.0	protein LATERAL ORGAN BOUNDARIES-like isoform X1
Swissprot	Q9FML4	9e-60	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2K1IZ19	0.0	A0A2K1IZ19_PHYPA; Uncharacterized protein
STRING	PP1S170_93V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	6e-60	LBD family protein

Link Out ? help Back to Top
Phytozome	Pp3c19_19610V3.2.p

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]