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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pp3c19_19400V3.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
LBD |
| Protein Properties |
Length: 231aa MW: 24081 Da PI: 8.4932 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c19_19400V3.1.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 145.8 | 1.2e-45 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++lp+++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++ql+
Pp3c19_19400V3.1.p 8 PCAACKFLRRKCTSECVFAPYFPPDQPHKFANVHKIFGASNVTKLLNELPTHQREDAVNSLAYEADARVKDPVYGCVGAISVLQRQVAQLQ 98
7****************************************************************************************** PP
DUF260 92 aelallkee 100
++la++++
Pp3c19_19400V3.1.p 99 NDLASAHSD 107
****99875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MASSSSSPCA ACKFLRRKCT SECVFAPYFP PDQPHKFANV HKIFGASNVT KLLNELPTHQ 60
REDAVNSLAY EADARVKDPV YGCVGAISVL QRQVAQLQND LASAHSDLAR YAAAGMVVPS 120
VDQGVSSSLG LRTSLSQGHA SREQMLTREQ LMDLARADPS HLSREHLMEL ARVGGGSYET 180
LQALGLSGAL GPLRASASNF RPGGEGRNRS GSGTGGGVSG SNAGGQIASP *
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5ly0_A | 3e-61 | 7 | 112 | 10 | 115 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 3e-61 | 7 | 112 | 10 | 115 | LOB family transfactor Ramosa2.1 |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP60 | 16 | 318 |
