PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_19230V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 578aa    MW: 64479.3 Da    PI: 9.0205
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_19230V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.5e-1549137196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f+k+ t s +++   l lp +f++++ g+   +  ++le +s+++W+v+l   +++++  + +++GW++F+ ++gL+ gD + F+l+++s 
  Pp3c19_19230V3.5.p  49 FLKKITESTMST---LELPTSFVRDYIGS--LHESVILEGPSSKQWRVEL--HGYGEGfnISFGQGWNNFAVDHGLQIGDQLSFSLSKKSY 132
                         566665555555...66*********555..3446***************..777777679999*********************998777 PP

                         E..EEEE CS
                  B3  90 felvvkv 96 
                         f   v v
  Pp3c19_19230V3.5.p 133 F--QVEV 137
                         7..5555 PP
2B3573.5e-18209297498
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         v+++ +v k  +l +pk+f ++    + esk++tl ++sg +W+vk     + g+  l++GW++F  +++L+e D++vF+l+++  f l+v
  Pp3c19_19230V3.5.p 209 VMSKGHVYKGFLLGIPKQFSKDWL--PSESKEITLANKSGHRWTVKW--LPSHGG--LSAGWRRFSLDHRLEEYDVCVFELVDKAHFVLLV 293
                         67778999999********97774..35788****************..999988..9************************99******* PP

                         EEE- CS
                  B3  95 kvfr 98 
                         ++fr
  Pp3c19_19230V3.5.p 294 HIFR 297
                         **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-2042139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-2044139IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.33846141IPR003340B3 DNA binding domain
CDDcd100172.87E-1947139No hitNo description
PfamPF023626.4E-1249135IPR003340B3 DNA binding domain
SMARTSM010198.1E-1249141IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-19204297IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.731206299IPR003340B3 DNA binding domain
SMARTSM010192.8E-14206299IPR003340B3 DNA binding domain
SuperFamilySSF1019361.35E-21207300IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-16208297IPR003340B3 DNA binding domain
CDDcd100178.62E-22209297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MERACELCLK NCLRLHGAEE SEAAKSCLIC VLWRSEGVKS DQTDRHPSFL KKITESTMST  60
LELPTSFVRD YIGSLHESVI LEGPSSKQWR VELHGYGEGF NISFGQGWNN FAVDHGLQIG  120
DQLSFSLSKK SYFQVEVYDG FGVLKRRAPD VINTPMEFAR VDKGELLPPH KFVNGTVMSK  180
RRPITELEKV VALKAARALN LVKPNTLVVM SKGHVYKGFL LGIPKQFSKD WLPSESKEIT  240
LANKSGHRWT VKWLPSHGGL SAGWRRFSLD HRLEEYDVCV FELVDKAHFV LLVHIFRVLG  300
SPQEDEGLYT PTSPLAKSSE GKRNNRKPFQ VSQDIKVDST PRKASGHVTK RSQHSSPGPD  360
SQNGKSTSEP AVEVISLKRK ICVLALPALS AKKGLGNQNH QPSDTVRAGP NIEAAVDSAL  420
SAYTDFGGKV RVAPRAPCDV ERTPTTARQD SEAFRSELMK LTKDLLIRNG VGRADPTKHV  480
LPDGHALSAD DMHKHLAKFV DTPPSVSRKG KGEWRGREYK VVRICRGRNV GNDTEFLAEL  540
EGYSENNDTK LARDDVTGYW WIPSDHFSWD MLTCYFE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356632.10.0uncharacterized protein LOC112272770 isoform X2
TrEMBLA0A2K1IZ070.0A0A2K1IZ07_PHYPA; Uncharacterized protein
STRINGPP1S170_63V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-15B3 family protein