PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_19230V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 655aa MW: 72918.8 Da PI: 9.1645 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.1 | 9e-15 | 49 | 137 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+ t s +++ l lp +f++++ g+ + ++le +s+++W+v+l +++++ + +++GW++F+ ++gL+ gD + F+l+++s Pp3c19_19230V3.4.p 49 FLKKITESTMST---LELPTSFVRDYIGS--LHESVILEGPSSKQWRVEL--HGYGEGfnISFGQGWNNFAVDHGLQIGDQLSFSLSKKSY 132 566665555555...66*********555..3446***************..777777679999*********************998777 PP E..EEEE CS B3 90 felvvkv 96 f v v Pp3c19_19230V3.4.p 133 F--QVEV 137 7..5555 PP | |||||||
2 | B3 | 56.7 | 4.3e-18 | 286 | 374 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 v+++ +v k +l +pk+f ++ + esk++tl ++sg +W+vk + g+ l++GW++F +++L+e D++vF+l+++ f l+v Pp3c19_19230V3.4.p 286 VMSKGHVYKGFLLGIPKQFSKDWL--PSESKEITLANKSGHRWTVKW--LPSHGG--LSAGWRRFSLDHRLEEYDVCVFELVDKAHFVLLV 370 67778999999********97774..35788****************..999988..9************************99******* PP EEE- CS B3 95 kvfr 98 ++fr Pp3c19_19230V3.4.p 371 HIFR 374 **98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 42 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-20 | 44 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.338 | 46 | 141 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.29E-19 | 47 | 139 | No hit | No description |
SMART | SM01019 | 8.1E-12 | 49 | 141 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-12 | 49 | 135 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.9E-19 | 281 | 374 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.8E-14 | 283 | 376 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.731 | 283 | 376 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.65E-21 | 284 | 377 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.8E-16 | 285 | 374 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.95E-22 | 286 | 374 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
MERACELCLK NCLRLHGAEE SEAAKSCLIC VLWRSEGVKS DQTDRHPSFL KKITESTMST 60 LELPTSFVRD YIGSLHESVI LEGPSSKQWR VELHGYGEGF NISFGQGWNN FAVDHGLQIG 120 DQLSFSLSKK SYFQVEVYDG FGVLKRRAPD VINTPMEVST KNVERKNQQN LDTSPCVGRT 180 EPNNLKNATQ PAGHLLTNLA KLTRSECRII SSPNIDAEIA KASKSEDSRH SIMQFARVDK 240 GELLPPHKFV NGTVMSKRRP ITELEKVVAL KAARALNLVK PNTLVVMSKG HVYKGFLLGI 300 PKQFSKDWLP SESKEITLAN KSGHRWTVKW LPSHGGLSAG WRRFSLDHRL EEYDVCVFEL 360 VDKAHFVLLV HIFRVLGSPQ EDEGLYTPTS PLAKSSEGKR NNRKPFQVSQ DIKVDSTPRK 420 ASGHVTKRSQ HSSPGPDSQN GKSTSEPAVE VISLKRKICV LALPALSAKK GLGNQNHQPS 480 DTVRAGPNIE AAVDSALSAY TDFGGKVRVA PRAPCDVERT PTTARQDSEA FRSELMKLTK 540 DLLIRNGVGR ADPTKHVLPD GHALSADDMH KHLAKFVDTP PSVSRKGKGE WRGREYKVVR 600 ICRGRNVGND TEFLAELEGY SENNDTKLAR DDVTGYWWIP SDHFSWDMLT CYFE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356629.1 | 0.0 | B3 domain-containing protein Os12g0591400-like isoform X1 | ||||
Refseq | XP_024356630.1 | 0.0 | B3 domain-containing protein Os12g0591400-like isoform X1 | ||||
TrEMBL | A0A2K1IZ07 | 0.0 | A0A2K1IZ07_PHYPA; Uncharacterized protein | ||||
STRING | PP1S170_63V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_19230V3.4.p |