PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c19_19230V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 578aa MW: 64479.3 Da PI: 9.0205 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.3 | 7.5e-15 | 49 | 137 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+ t s +++ l lp +f++++ g+ + ++le +s+++W+v+l +++++ + +++GW++F+ ++gL+ gD + F+l+++s Pp3c19_19230V3.3.p 49 FLKKITESTMST---LELPTSFVRDYIGS--LHESVILEGPSSKQWRVEL--HGYGEGfnISFGQGWNNFAVDHGLQIGDQLSFSLSKKSY 132 566665555555...66*********555..3446***************..777777679999*********************998777 PP E..EEEE CS B3 90 felvvkv 96 f v v Pp3c19_19230V3.3.p 133 F--QVEV 137 7..5555 PP | |||||||
2 | B3 | 57 | 3.5e-18 | 209 | 297 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 v+++ +v k +l +pk+f ++ + esk++tl ++sg +W+vk + g+ l++GW++F +++L+e D++vF+l+++ f l+v Pp3c19_19230V3.3.p 209 VMSKGHVYKGFLLGIPKQFSKDWL--PSESKEITLANKSGHRWTVKW--LPSHGG--LSAGWRRFSLDHRLEEYDVCVFELVDKAHFVLLV 293 67778999999********97774..35788****************..999988..9************************99******* PP EEE- CS B3 95 kvfr 98 ++fr Pp3c19_19230V3.3.p 294 HIFR 297 **98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.6E-20 | 42 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-20 | 44 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.338 | 46 | 141 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.87E-19 | 47 | 139 | No hit | No description |
Pfam | PF02362 | 6.4E-12 | 49 | 135 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-12 | 49 | 141 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-19 | 204 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.731 | 206 | 299 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-14 | 206 | 299 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.35E-21 | 207 | 300 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-16 | 208 | 297 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.62E-22 | 209 | 297 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 578 aa Download sequence Send to blast |
MERACELCLK NCLRLHGAEE SEAAKSCLIC VLWRSEGVKS DQTDRHPSFL KKITESTMST 60 LELPTSFVRD YIGSLHESVI LEGPSSKQWR VELHGYGEGF NISFGQGWNN FAVDHGLQIG 120 DQLSFSLSKK SYFQVEVYDG FGVLKRRAPD VINTPMEFAR VDKGELLPPH KFVNGTVMSK 180 RRPITELEKV VALKAARALN LVKPNTLVVM SKGHVYKGFL LGIPKQFSKD WLPSESKEIT 240 LANKSGHRWT VKWLPSHGGL SAGWRRFSLD HRLEEYDVCV FELVDKAHFV LLVHIFRVLG 300 SPQEDEGLYT PTSPLAKSSE GKRNNRKPFQ VSQDIKVDST PRKASGHVTK RSQHSSPGPD 360 SQNGKSTSEP AVEVISLKRK ICVLALPALS AKKGLGNQNH QPSDTVRAGP NIEAAVDSAL 420 SAYTDFGGKV RVAPRAPCDV ERTPTTARQD SEAFRSELMK LTKDLLIRNG VGRADPTKHV 480 LPDGHALSAD DMHKHLAKFV DTPPSVSRKG KGEWRGREYK VVRICRGRNV GNDTEFLAEL 540 EGYSENNDTK LARDDVTGYW WIPSDHFSWD MLTCYFE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356632.1 | 0.0 | uncharacterized protein LOC112272770 isoform X2 | ||||
TrEMBL | A0A2K1IZ07 | 0.0 | A0A2K1IZ07_PHYPA; Uncharacterized protein | ||||
STRING | PP1S170_63V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58280.1 | 1e-15 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c19_19230V3.3.p |