PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_19230V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 655aa    MW: 72918.8 Da    PI: 9.1645
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_19230V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.19e-1549137196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f+k+ t s +++   l lp +f++++ g+   +  ++le +s+++W+v+l   +++++  + +++GW++F+ ++gL+ gD + F+l+++s 
  Pp3c19_19230V3.1.p  49 FLKKITESTMST---LELPTSFVRDYIGS--LHESVILEGPSSKQWRVEL--HGYGEGfnISFGQGWNNFAVDHGLQIGDQLSFSLSKKSY 132
                         566665555555...66*********555..3446***************..777777679999*********************998777 PP

                         E..EEEE CS
                  B3  90 felvvkv 96 
                         f   v v
  Pp3c19_19230V3.1.p 133 F--QVEV 137
                         7..5555 PP
2B356.74.3e-18286374498
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         v+++ +v k  +l +pk+f ++    + esk++tl ++sg +W+vk     + g+  l++GW++F  +++L+e D++vF+l+++  f l+v
  Pp3c19_19230V3.1.p 286 VMSKGHVYKGFLLGIPKQFSKDWL--PSESKEITLANKSGHRWTVKW--LPSHGG--LSAGWRRFSLDHRLEEYDVCVFELVDKAHFVLLV 370
                         67778999999********97774..35788****************..999988..9************************99******* PP

                         EEE- CS
                  B3  95 kvfr 98 
                         ++fr
  Pp3c19_19230V3.1.p 371 HIFR 374
                         **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1942139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-2044139IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.33846141IPR003340B3 DNA binding domain
CDDcd100171.29E-1947139No hitNo description
SMARTSM010198.1E-1249141IPR003340B3 DNA binding domain
PfamPF023627.7E-1249135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-19281374IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-14283376IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731283376IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-21284377IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-16285374IPR003340B3 DNA binding domain
CDDcd100173.95E-22286374No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MERACELCLK NCLRLHGAEE SEAAKSCLIC VLWRSEGVKS DQTDRHPSFL KKITESTMST  60
LELPTSFVRD YIGSLHESVI LEGPSSKQWR VELHGYGEGF NISFGQGWNN FAVDHGLQIG  120
DQLSFSLSKK SYFQVEVYDG FGVLKRRAPD VINTPMEVST KNVERKNQQN LDTSPCVGRT  180
EPNNLKNATQ PAGHLLTNLA KLTRSECRII SSPNIDAEIA KASKSEDSRH SIMQFARVDK  240
GELLPPHKFV NGTVMSKRRP ITELEKVVAL KAARALNLVK PNTLVVMSKG HVYKGFLLGI  300
PKQFSKDWLP SESKEITLAN KSGHRWTVKW LPSHGGLSAG WRRFSLDHRL EEYDVCVFEL  360
VDKAHFVLLV HIFRVLGSPQ EDEGLYTPTS PLAKSSEGKR NNRKPFQVSQ DIKVDSTPRK  420
ASGHVTKRSQ HSSPGPDSQN GKSTSEPAVE VISLKRKICV LALPALSAKK GLGNQNHQPS  480
DTVRAGPNIE AAVDSALSAY TDFGGKVRVA PRAPCDVERT PTTARQDSEA FRSELMKLTK  540
DLLIRNGVGR ADPTKHVLPD GHALSADDMH KHLAKFVDTP PSVSRKGKGE WRGREYKVVR  600
ICRGRNVGND TEFLAELEGY SENNDTKLAR DDVTGYWWIP SDHFSWDMLT CYFE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356629.10.0B3 domain-containing protein Os12g0591400-like isoform X1
RefseqXP_024356630.10.0B3 domain-containing protein Os12g0591400-like isoform X1
TrEMBLA0A2K1IZ070.0A0A2K1IZ07_PHYPA; Uncharacterized protein
STRINGPP1S170_63V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20511436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-20B3 family protein