PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_19050V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 446aa MW: 48776.1 Da PI: 9.0528 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.2 | 4.3e-39 | 107 | 167 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ ++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+rknk+++ Pp3c19_19050V3.4.p 107 PDQVIACPRCQSLNTKFCYYNNYSLTQPRHFCKSCRRYWTAGGTLRNVPVGGGCRKNKRTK 167 68899*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-26 | 107 | 165 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-33 | 108 | 165 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.217 | 111 | 165 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 113 | 149 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MIAAFGGARV PDNLSSFGRD IRFHPWEQHG QLAFTNQAGP SKAQGYMVNV QTPLMSVAVL 60 GHGDWAMIPS SSNHEQQQQQ AQLQQQEKKA SQLFAQRALQ ERRLKPPDQV IACPRCQSLN 120 TKFCYYNNYS LTQPRHFCKS CRRYWTAGGT LRNVPVGGGC RKNKRTKPRT PEGQNGRTGS 180 ADGDSMSVPV LQHPGFNSTS IDFLSSSEGS AFGSADPSMR ADSPMCQSTE GGLPMFHPGA 240 QSSSIAQHQL PQPFDSGIPG LNFFRNANRV PGTTLNLHPT FQMPTGDLSE MFDTSNAPRV 300 GALSTLSEGL GTFNINPKSG RDQQSLMSLE RWQAASKQHA PSGIWGLPEM AQAQANADMS 360 RHQDAKGKMT LAMAPASGMD APKRSQQQQQ QQQHQQRPTP SWEHSNPQEN PGLHYEQQSE 420 QNYWRNPGGW PSTEAFQSSG GGQAL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7409 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356393.1 | 0.0 | dof zinc finger protein DOF1.4-like isoform X1 | ||||
Refseq | XP_024356394.1 | 0.0 | dof zinc finger protein DOF1.4-like isoform X1 | ||||
Refseq | XP_024356395.1 | 0.0 | dof zinc finger protein DOF1.4-like isoform X1 | ||||
Refseq | XP_024356396.1 | 0.0 | dof zinc finger protein DOF1.4-like isoform X1 | ||||
TrEMBL | A0A2K1IYZ1 | 0.0 | A0A2K1IYZ1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S170_42V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 4e-34 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_19050V3.4.p |