PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c19_19050V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 400aa MW: 43761.6 Da PI: 8.8708 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.4 | 3.6e-39 | 61 | 121 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ ++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+rknk+++ Pp3c19_19050V3.1.p 61 PDQVIACPRCQSLNTKFCYYNNYSLTQPRHFCKSCRRYWTAGGTLRNVPVGGGCRKNKRTK 121 68899*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-26 | 54 | 119 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-33 | 62 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.217 | 65 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 67 | 103 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 400 aa Download sequence Send to blast |
MVNVQTPLMS VAVLGHGDWA MIPSSSNHEQ QQQQAQLQQQ EKKASQLFAQ RALQERRLKP 60 PDQVIACPRC QSLNTKFCYY NNYSLTQPRH FCKSCRRYWT AGGTLRNVPV GGGCRKNKRT 120 KPRTPEGQNG RTGSADGDSM SVPVLQHPGF NSTSIDFLSS SEGSAFGSAD PSMRADSPMC 180 QSTEGGLPMF HPGAQSSSIA QHQLPQPFDS GIPGLNFFRN ANRVPGTTLN LHPTFQMPTG 240 DLSEMFDTSN APRVGALSTL SEGLGTFNIN PKSGRDQQSL MSLERWQAAS KQHAPSGIWG 300 LPEMAQAQAN ADMSRHQDAK GKMTLAMAPA SGMDAPKRSQ QQQQQQQHQQ RPTPSWEHSN 360 PQENPGLHYE QQSEQNYWRN PGGWPSTEAF QSSGGGQAL* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.7409 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356397.1 | 0.0 | dof zinc finger protein DOF1.4-like isoform X2 | ||||
TrEMBL | A0A2K1IYZ1 | 0.0 | A0A2K1IYZ1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S170_42V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60200.1 | 2e-34 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c19_19050V3.1.p |