PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_18240V3.3.p
Common NamePHYPADRAFT_88654
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 666aa    MW: 72655.3 Da    PI: 8.5213
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_18240V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.35.3e-23114179171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         rk+ksL+ll+++fl+l+ ++e + ++l+e++++L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  Pp3c19_18240V3.3.p 114 RKDKSLGLLCENFLNLCGTEEGECISLDEASSRL---GV--ERRRIYDIVNVLESVEILIRKAKNRYTWHG 179
                         79*****************999************...**..****************************98 PP
2E2F_TDP70.91.5e-22257337171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                         r+eksL+ll+qkf++l+  s++++v+l+++a+ L+       ++k+k+RR+YDi+N+L++l+liek     ++k+++rw g
  Pp3c19_18240V3.3.p 257 RREKSLGLLSQKFVQLFLVSQTQVVSLDDAARLLLGGckdasKFKTKVRRLYDIANILSSLKLIEKthiaeNRKPAFRWLG 337
                         689*******************************988999****************************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-26110180IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.63E-15113178IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.0E-29114179IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-19115179IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-24253338IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-33257337IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-11259338IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.3E-19259337IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MDSPSSTKQP RRSPLQRRGL ANGDRMLPVT PNTRNDVNTA RERVSHTSEQ GSISSGKENQ  60
VRRSGGSVKR LTGSSALRDY ETLDESTQSL SPSICAENHL QSDADTRTHP SYNRKDKSLG  120
LLCENFLNLC GTEEGECISL DEASSRLGVE RRRIYDIVNV LESVEILIRK AKNRYTWHGC  180
SRLTQALQTL KDLALRDYGL GEFANTSTDE RSSTATNNCD SDDEDEERKN LPSQESEGCA  240
SVLSQQSAAP TAKADYRREK SLGLLSQKFV QLFLVSQTQV VSLDDAARLL LGGCKDASKF  300
KTKVRRLYDI ANILSSLKLI EKTHIAENRK PAFRWLGTKD DLVGPATRMR ITGNEFQSQN  360
ASQSLNCSSL SIQKTQRGLK RACMDAPRAE ATPSKRTALK PLQPRDSNTM TPHSRDVINK  420
PVPLYPRASQ VDSPVSDPRT LNFTASPHDA AESPTARGTP RKSTGGWREW GDSIQTQAIP  480
ITPPWSAQCC DHAGSSNAVA LPGTSSPICT PGITSQTPGT PTMTPMSGRS CCTCQSRGSL  540
DNLFPFRPPG ALFNPFFPPP PFPMLPQLAA AAAAAGFPFP PTGFVPEQFL GSDPTRSQDC  600
SQHRVDNGIT AAAALQYQNE ALGHMFAHYT EAWKSWYLQA ASMVNPSCFE TPPPAPRPRS  660
PQSPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A6e-441143294228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403366.10.0transcription factor E2F8-like isoform X1
TrEMBLA9T6B50.0A9T6B5_PHYPA; Predicted protein
STRINGPP1S172_68V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.15e-65DP-E2F-like 1
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]