PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_17160V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 404aa    MW: 42933.2 Da    PI: 9.2819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_17160V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00113558123
                        EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                        +kC+ C+k  s+ s ++ H    H
  Pp3c19_17160V3.2.p 35 FKCHVCHKKLSSASGMVIHVLQvH 58
                        89*****************87655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080811.992665IPR003656Zinc finger, BED-type
SMARTSM00355151134IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801334IPR007087Zinc finger, C2H2
SMARTSM003550.0723558IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803758IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGKKKKKTFK VWCFYCEREF EDEKILIQHQ KAKHFKCHVC HKKLSSASGM VIHVLQVHKE  60
SVSKVPNAKS ERESLIDLEI YGMEGIPADI LAAHDGDYDE DENPSKVARV EVPPSLPFVG  120
GGMMGSNAIG MAPQPMYTAT QPMYRPPPGS GPRPPSNWQP QPPPPQGWGG PLHGQPGPPR  180
MPQPPQPLFP IQGQRPSPPS QPPPQPLFPI RPPLPPGSAP PPPRPLFPVA QTPNGPPPPL  240
PPPAPPLSSA GSVVKPPPPS PGSNQSSING SPAMAPSLPP SGASPGVNMG AGVNARLPPS  300
PYGAMSGPPP PPPSSHMYSS GPNTGGPSIG PPPVISNKPP GPAGGTNEVY LVWDDEFFSM  360
EERRAALRKY QVHDETMQMS SVDAAIDRRI LEGRLAGRMS FHV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.62970.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Barely detectable in 3-days-old seedling, and then increases. {ECO:0000269|PubMed:17138694}.
UniprotTISSUE SPECIFICITY: Expressed in root, shoot apex, leaves, stem and flowers. Expressed in expanding leaves, in the vasculature of fully expanded leaves, in the inflorescence, throughout young floral primordia, in the carpels of older flowers and in fertilized ovules. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024356739.10.0protein SUPPRESSOR OF FRI 4-like
SwissprotQ9C5G01e-108SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A2K1IYR30.0A0A2K1IYR3_PHYPA; Uncharacterized protein
STRINGPP1S495_7V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-52C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]