PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_1580V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 526aa    MW: 57788.6 Da    PI: 7.7758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_1580V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1059.2e-331342771128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                        lp+G+rF+P+deel+ ++L++k+ + +      l+++ + ++e  +i++++P++Lp  vk++ +++++F++ + +y+tg+rk+r+       
  Pp3c19_1580V3.2.p 134 LPAGVRFDPSDEELL-DHLAAKIGRGSkkphplLDEFIHtLEEEdGICRTHPENLP-GVKKDGSSCHYFHRPSMAYTTGTRKRRKiqtddip 223
                        799************.899999987776776663333333666646**********.7778899********************85555555 PP

                NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           ++ +W++tgk+++v + +g++ g kk++v+y  +g+++k  kt+Wvmh+y+l
  Pp3c19_1580V3.2.p 224 dgGADVRWHKTGKTRPVSQ-GGKVLGHKKIMVLYraTGKKSKNMKTNWVMHQYHL 277
                        4433788**********99.9*************6668999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-38121296IPR003441NAC domain
PROSITE profilePS5100534134296IPR003441NAC domain
PfamPF023656.0E-14135277IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MRLVAPPCAS LLRPALLRLS PPLLEACFLD RLPQYTASGL LHLNLLLLLL LLPVRYLVIQ  60
LGESVPRSGP RDVSGVYRST TGRMFRGRGC VRHRGQGRGV EVEYPVALGC KRALCQSKSC  120
CDYNAAAHAK LDSLPAGVRF DPSDEELLDH LAAKIGRGSK KPHPLLDEFI HTLEEEDGIC  180
RTHPENLPGV KKDGSSCHYF HRPSMAYTTG TRKRRKIQTD DIPDGGADVR WHKTGKTRPV  240
SQGGKVLGHK KIMVLYRATG KKSKNMKTNW VMHQYHLGSN EEETDGELVV CKVFFQKAPR  300
SCPSRRTEAS AVDDVEGEPS ESDIGFQAPG LSGDSPSVSV VTRGRPPLTP RSCPPSRTAK  360
QLYAEPTESR SEIFDPQLLA TQSKQRGVQS HMDQCNDKEG VGEDIGVDMN LEATGYVVYE  420
LGDVALGTLG AAMYDGNQTK HINAGLSGQL FSEGEDQSFQ AVNLNEEHES WGLDHSVEAT  480
KNEDPSVMSL LCDEHLNGCG IRGLQLPKPF VRCWLQRGGR TFQRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-151272779140Stress-induced transcription factor NAC1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.59101e-148gametophore| protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361187.10.0uncharacterized protein LOC112275234 isoform X2
TrEMBLA0A2K1ILP60.0A0A2K1ILP6_PHYPA; Uncharacterized protein
STRINGPP1S251_11V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-76NAC domain containing protein 73