PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c19_1580V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 40115.4 Da PI: 4.6144 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.7 | 6.1e-16 | 2 | 73 | 67 | 128 |
NAM 67 kyatgkrknra.........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +y+tg+rk+r+ ++ +W++tgk+++v + +g++ g kk++v+y +g+++k kt+Wvmh+y+l Pp3c19_1580V3.1.p 2 AYTTGTRKRRKiqtddipdgGADVRWHKTGKTRPVSQ-GGKVLGHKKIMVLYraTGKKSKNMKTNWVMHQYHL 73 5899999999745555544433788**********99.9*************6668999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.891 | 1 | 92 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-20 | 2 | 92 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-5 | 25 | 73 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MAYTTGTRKR RKIQTDDIPD GGADVRWHKT GKTRPVSQGG KVLGHKKIMV LYRATGKKSK 60 NMKTNWVMHQ YHLGSNEEET DGELVVCKVF FQKAPRSCPS RRTEASAVDD VEGEPSESDI 120 GFQAPGLSGD SPSVSVVTRG RPPLTPRSCP PSRTAKQLYA EPTESRSEIF DPQLLATQSK 180 QRGVFRKYCV QSHMDQCNDK EGVGEDIGVD MNLEATGYVV YELGDVALGT LGAAMYDGNQ 240 TKHINAGLSG QLFSEGEDQS FQAVNLNEEH ESWGLDHSVE ATKNEDPSVM SLLCDEHLNG 300 DPLAEDAEYE DFNFRSLSYD VGCSVEDEPF RGVEGDRNGV DPALDTLVLD TPPDMLEPID 360 HLNR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361185.1 | 0.0 | uncharacterized protein LOC112275234 isoform X1 | ||||
Refseq | XP_024361186.1 | 0.0 | uncharacterized protein LOC112275234 isoform X1 | ||||
Refseq | XP_024361187.1 | 0.0 | uncharacterized protein LOC112275234 isoform X2 | ||||
TrEMBL | A0A2K1IWT6 | 0.0 | A0A2K1IWT6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S251_11V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 7e-40 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c19_1580V3.1.p |