PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c19_1580V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 365aa    MW: 40115.4 Da    PI: 4.6144
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c19_1580V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.76.1e-1627367128
                NAM  67 kyatgkrknra.........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        +y+tg+rk+r+          ++ +W++tgk+++v + +g++ g kk++v+y  +g+++k  kt+Wvmh+y+l
  Pp3c19_1580V3.1.p   2 AYTTGTRKRRKiqtddipdgGADVRWHKTGKTRPVSQ-GGKVLGHKKIMVLYraTGKKSKNMKTNWVMHQYHL 73 
                        5899999999745555544433788**********99.9*************6668999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.891192IPR003441NAC domain
SuperFamilySSF1019411.44E-20292IPR003441NAC domain
PfamPF023651.1E-52573IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAYTTGTRKR RKIQTDDIPD GGADVRWHKT GKTRPVSQGG KVLGHKKIMV LYRATGKKSK  60
NMKTNWVMHQ YHLGSNEEET DGELVVCKVF FQKAPRSCPS RRTEASAVDD VEGEPSESDI  120
GFQAPGLSGD SPSVSVVTRG RPPLTPRSCP PSRTAKQLYA EPTESRSEIF DPQLLATQSK  180
QRGVFRKYCV QSHMDQCNDK EGVGEDIGVD MNLEATGYVV YELGDVALGT LGAAMYDGNQ  240
TKHINAGLSG QLFSEGEDQS FQAVNLNEEH ESWGLDHSVE ATKNEDPSVM SLLCDEHLNG  300
DPLAEDAEYE DFNFRSLSYD VGCSVEDEPF RGVEGDRNGV DPALDTLVLD TPPDMLEPID  360
HLNR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361185.10.0uncharacterized protein LOC112275234 isoform X1
RefseqXP_024361186.10.0uncharacterized protein LOC112275234 isoform X1
RefseqXP_024361187.10.0uncharacterized protein LOC112275234 isoform X2
TrEMBLA0A2K1IWT60.0A0A2K1IWT6_PHYPA; Uncharacterized protein
STRINGPP1S251_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.17e-40NAC domain containing protein 73