PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c18_9980V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 363aa MW: 38487.1 Da PI: 8.3755 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.2 | 4.1e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C++ C+l+p++ +++q +++ +v+k+FG++ ++ +++a+pe++r+++++sl+yeA+ r+ +Pv Gavg+++++++q+ Pp3c18_9980V3.2.p 2 SCNGCRVLRKGCSEACILRPCLqwidsADAQGHATVFVAKFFGRAGLMGFITAVPENQRPALFQSLLYEACGRTVNPVFGAVGLLWAGNWQV 93 6*********************9998666778************************************************************ PP DUF260 88 eqlkaelall 97 +q+++e++l Pp3c18_9980V3.2.p 94 CQAAVETVLK 103 ****998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.278 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEACILR PCLQWIDSAD AQGHATVFVA KFFGRAGLMG FITAVPENQR 60 PALFQSLLYE ACGRTVNPVF GAVGLLWAGN WQVCQAAVET VLKGGVLKAP SSCSPSFSTL 120 PQGPLHPSIP GTDTPAGSRG RDSLMPSVLI SAKESTHDLC KPRAGIASTP GQFQMTNVYE 180 SKDHAAAAAA VKSTWDRKWD GNFQQNDLPK KQEQGAAKGN VKSNLIMWSE AVGSVAHKVG 240 EKRERDFSMG AHVLAPAPRR LKPCVVGEYG FPGGMAIKES LCDDQETVVG STEHLDLGLT 300 LKVKDGKGGQ ITGLKRVYSP CDSVNSEGSV TSLDTTPPHV RPSFLSPMFG GDMGCKLLPL 360 LS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.19048 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024402097.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Refseq | XP_024402098.1 | 0.0 | LOB domain-containing protein 36-like | ||||
TrEMBL | A0A2K1J0I9 | 0.0 | A0A2K1J0I9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S19_217V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 7e-66 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c18_9980V3.2.p |