PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c18_21380V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 612aa MW: 66866.4 Da PI: 7.2169 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00046 | 261 | 285 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ ++k H +tH Pp3c18_21380V3.2.p 261 FRCQheGCNKTFKNPQTMKMHHKTH 285 89**********************9 PP | |||||||
2 | zf-C2H2 | 15 | 7.3e-05 | 316 | 338 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k+F ++L+rH + H Pp3c18_21380V3.2.p 316 RCPKCKKTFVGLYELRRHYGRkH 338 7*****************86666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.16E-6 | 257 | 286 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-8 | 259 | 288 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.783 | 261 | 290 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.003 | 261 | 285 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 263 | 285 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.03E-7 | 309 | 354 | No hit | No description |
PROSITE profile | PS50157 | 9.473 | 315 | 344 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 315 | 338 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.0E-4 | 316 | 350 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 317 | 338 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 406 | 427 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 612 aa Download sequence Send to blast |
MALAATPALS TFYGMEATNL LQAPNFSGNP SYMLNDAGPL SLGYGFSSGG SSLYNYGDNA 60 ALAVSWDAYL TRDCSNFNPP NTLSQSLSFS DSSVYSTDES DLFMSNNSDE LFQLINECNL 120 LSAGSSVSTI HPNLVSTLKN MVSPGLVGSC ISQGDMTCHN AQAAVLDQLA LTQTWMEQHQ 180 QEQLQHDNID SLRSALMRHS QPQVMVPKVE LHDFTSTVGA MVPMATISDL KPQKADEKSE 240 TEDSIEAAVV SLDLIKNRRP FRCQHEGCNK TFKNPQTMKM HHKTHYSDGS AASKACMLPT 300 LSSSLKAGHN KKIPSRCPKC KKTFVGLYEL RRHYGRKHSE GEKPFGCRKC GKKFYIEVLK 360 NLLILLSVAV FCHVHPLPSL QAIRANDADV TKVDVRDHEK LCGEPIECKC GLKFAFKCNL 420 VAHKKAHPAC QDHLLNNSNS TTSNNQSSYS DDSEQSPCSL RSSPRSGTKR AREPASPIQS 480 SLHVPLPDFE GIPEAPAFKM ARHDLAWMSF PTDTSLLCAS NVNYPPISFT NLPLSSRYPN 540 QGDSQEHFSS KVHPISSTYP EAVNCEMGIV STNSPLRHGP ADVASLPSAP TKSATPWANF 600 FYSFSHEAVS V* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.3156 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024402898.1 | 0.0 | zinc finger protein 184-like isoform X1 | ||||
TrEMBL | A0A2K1J1W8 | 0.0 | A0A2K1J1W8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S33_92V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10956 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60470.1 | 3e-07 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c18_21380V3.2.p |