PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 132aa MW: 14798.8 Da PI: 7.8761

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c18_1910V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.3	1.1e-12	54	78	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+++C ff+rtGtC+yG+ C+F H+ Pp3c18_1910V3.2.p 54 KRPPCTFFLRTGTCQYGSECRFEHP 78 89**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.58E-17	4	61	No hit	No description
Pfam	PF06220	6.3E-11	5	38	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	16.004	52	80	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-7	52	80	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.3E-6	53	79	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-10	54	78	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-6	56	77	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MPAHKYYCDY CDKQFYDTPA SRKRHLQGIA HQRAKKQWFD SFRDQESGLP QDAKRPPCTF 60 FLRTGTCQYG SECRFEHPVQ PPAPSAPGPF EALNVAPESS ALPNLLMKDL PLSLRPPPEG 120 GYPPLPPVEW G*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024402660.1	5e-93	zinc finger CCCH domain-containing protein 3-like
Swissprot	Q0JP11	1e-31	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2K1IZP4	1e-91	A0A2K1IZP4_PHYPA; Uncharacterized protein
STRING	PP1S17_322V6.1	2e-92	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-16	C3H family protein

Link Out ? help Back to Top
Phytozome	Pp3c18_1910V3.2.p
Entrez Gene	5918448

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]