PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c18_16640V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 395aa MW: 44674.1 Da PI: 6.3746 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.3 | 5e-17 | 292 | 381 | 3 | 89 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 k l psdv+++gr+v++k+ ae+h ++ +e++ +t+ed + ++W+++++++ +s++ ++l +++ +Fv+a++L +gD++v+ ++ ++ Pp3c18_16640V3.1.p 292 KFLQPSDVNNLGRIVISKREAETHlpNLAVKEGIFITMEDfDTRERWTFRYRFWPNSRSrMYLLENTGDFVRAHHLTTGDVLVLWRNC-EG 381 8899**********************66667899******666699*******888877777777******************98444.33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.7E-26 | 281 | 384 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-22 | 289 | 385 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.4E-16 | 290 | 391 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.783 | 290 | 394 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.98E-24 | 292 | 385 | No hit | No description |
Pfam | PF02362 | 2.4E-13 | 292 | 378 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MEESIAITWP QDLRGFGRGK LGDKAYLSFG PEPESSNLPT SVRSYTEFTT SDSSTGTTAD 60 CDYFDPFLQT DMWKELTPDP TADTIGNCSN ESVSPILEQL LTCKDTLESQ SLWGIDQQQV 120 GMLPHETQEW TQPDCSLMDD WNQNFNCGST DVECESSMQP TENQLGHVPA WMTEMPAGSY 180 SSTSPGIIST ANQLMQSSMI MSFQEDQQLK RPSCTTSGKV AAANSKAAAR KHRIFLRQKS 240 APHHRNISHA SGRSSSPREL KKIHPTKLPK EFLMWSNFQG RNMDSLRFLL HKFLQPSDVN 300 NLGRIVISKR EAETHLPNLA VKEGIFITME DFDTRERWTF RYRFWPNSRS RMYLLENTGD 360 FVRAHHLTTG DVLVLWRNCE GGTFVRHNSL NRIG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 8e-31 | 286 | 385 | 1 | 100 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 8e-31 | 286 | 385 | 1 | 100 | B3 domain-containing transcription factor FUS3 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024402136.1 | 0.0 | putative B3 domain-containing protein Os04g0676650 isoform X2 | ||||
TrEMBL | A0A2K1J1C9 | 0.0 | A0A2K1J1C9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S3_118V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP788 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-34 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c18_16640V3.1.p |