PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_16640V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 395aa    MW: 44674.1 Da    PI: 6.3746
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_16640V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35e-17292381389
                         EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         k l psdv+++gr+v++k+ ae+h  ++  +e++ +t+ed  + ++W+++++++ +s++ ++l +++ +Fv+a++L +gD++v+ ++  ++
  Pp3c18_16640V3.1.p 292 KFLQPSDVNNLGRIVISKREAETHlpNLAVKEGIFITMEDfDTRERWTFRYRFWPNSRSrMYLLENTGDFVRAHHLTTGDVLVLWRNC-EG 381
                         8899**********************66667899******666699*******888877777777******************98444.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-26281384IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-22289385IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.4E-16290391IPR003340B3 DNA binding domain
PROSITE profilePS508638.783290394IPR003340B3 DNA binding domain
CDDcd100173.98E-24292385No hitNo description
PfamPF023622.4E-13292378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEESIAITWP QDLRGFGRGK LGDKAYLSFG PEPESSNLPT SVRSYTEFTT SDSSTGTTAD  60
CDYFDPFLQT DMWKELTPDP TADTIGNCSN ESVSPILEQL LTCKDTLESQ SLWGIDQQQV  120
GMLPHETQEW TQPDCSLMDD WNQNFNCGST DVECESSMQP TENQLGHVPA WMTEMPAGSY  180
SSTSPGIIST ANQLMQSSMI MSFQEDQQLK RPSCTTSGKV AAANSKAAAR KHRIFLRQKS  240
APHHRNISHA SGRSSSPREL KKIHPTKLPK EFLMWSNFQG RNMDSLRFLL HKFLQPSDVN  300
NLGRIVISKR EAETHLPNLA VKEGIFITME DFDTRERWTF RYRFWPNSRS RMYLLENTGD  360
FVRAHHLTTG DVLVLWRNCE GGTFVRHNSL NRIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A8e-312863851100B3 domain-containing transcription factor FUS3
6j9b_D8e-312863851100B3 domain-containing transcription factor FUS3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402136.10.0putative B3 domain-containing protein Os04g0676650 isoform X2
TrEMBLA0A2K1J1C90.0A0A2K1J1C9_PHYPA; Uncharacterized protein
STRINGPP1S3_118V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-34B3 family protein