PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_14850V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 345aa    MW: 39066.5 Da    PI: 10.9256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_14850V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.2e-15286332455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N+++  Lr l+P+       K++Ka+iL  A+eY+k+Lq
  Pp3c18_14850V3.2.p 286 SHVLAERRRREKLNERLLSLRALVPNV-----SKMDKASILGDAIEYVKELQ 332
                         8999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.58282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-18284339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-18285336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-14286336No hitNo description
PfamPF000101.3E-12286332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAGNDATPLL LRCNKSASIQ TVICVPLKDG FREFGTTQNV PVDSKMVQHL LSFLEQPKHN  60
RSQSSLVIGQ RYEPSNMTCQ KSEHEAHGNQ SPSSGKTQRS RNVDIRRTHS FLHFALAQWI  120
QVFLHNFDGI LRHASARNPK RAKLSNPPRT KVEDKMSLNN VNISTRLSRQ GPRTCVHIFQ  180
RLQGSASRRN GEQFPEGSKR TSPASAFVIW KNSLTPPRKY RKAGNRQWIL KEVLFHVTQL  240
FNGTLKEINV EVESSLVTTE KVGEDRRASE LESHKPVPSI EETNASHVLA ERRRREKLNE  300
RLLSLRALVP NVSKMDKASI LGDAIEYVKE LQSRLQAFQI RAEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-16286335857Transcription factor MYC2
5gnj_B2e-16286335857Transcription factor MYC2
5gnj_E2e-16286335857Transcription factor MYC2
5gnj_F2e-16286335857Transcription factor MYC2
5gnj_G2e-16286335857Transcription factor MYC2
5gnj_I2e-16286335857Transcription factor MYC2
5gnj_M2e-16286335857Transcription factor MYC2
5gnj_N2e-16286335857Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290295ERRRRE
2291296RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402271.11e-143LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like
TrEMBLA0A2K1J1650.0A0A2K1J165_PHYPA; Uncharacterized protein
STRINGPP1S3_323V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.16e-09bHLH family protein