PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_7930V3.4.p | ||||||||
Common Name | PpDof1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 503aa MW: 53321.8 Da PI: 8.0756 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.4 | 2.7e-37 | 148 | 206 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k ++cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnv vG+grrknk Pp3c17_7930V3.4.p 148 PDKLIPCPRCDSLDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTLRNVLVGAGRRKNKY 206 78999****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-28 | 138 | 205 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.8E-31 | 150 | 205 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.68 | 152 | 206 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 154 | 190 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MSKLRKWMMK EERENSAGSA DTSAIKLFGK TIAVNSGVSD SQETSTKAGT SADAAVVHPC 60 ASQAGSEEVD GASTQSEADE MGSSICNEIR NVEAPKDAPQ ESQVSSEKLA SETMTVSTSI 120 QAPAAAVAQE KQRPLTVEEK KEQCVRKPDK LIPCPRCDSL DTKFCYYNNY NINQPRHFCK 180 SCQRYWTAGG TLRNVLVGAG RRKNKYGSSQ MKQEASEGVN SGITTVRLDH HEGAQPMLPC 240 AINPYGLKVP PMNIPQLAAS CASRQASEAQ STVTSCGKES NKVFTSASAF KPAGPDVSND 300 SVSKLRQRTR TDTPEGKDVS SPGSSPFVSE SPTSHVLTSR VQPQQQEVQQ QAMWTKSNPQ 360 LGFFNGAWPY GYSIGWSGAG PIHGTPAMCS PHPASSGTTS PPSGMCPTPG NVWTGLWASG 420 MPGMPQGMAS MSGMSGVSAM PFGWNMCPGG WTLPWRPVPA VAVQGSADVV VVNSGGFRKR 480 DGANDEGVRK MARIGSPEEV VV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4342 | 0.0 | gametophore| protonema| sporophyte |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB626697 | 0.0 | AB626697.1 Physcomitrella patens PpDof1 mRNA for Dof transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401077.1 | 0.0 | uncharacterized protein LOC112294633 | ||||
TrEMBL | H1ACS8 | 0.0 | H1ACS8_PHYPA; Dof transcription factor | ||||
STRING | PP1S392_2V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 5e-36 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_7930V3.4.p |
Publications ? help Back to Top | |||
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