PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_7930V3.4.p

Common Name

PpDof1

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 503aa MW: 53321.8 Da PI: 8.0756

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_7930V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.4	2.7e-37	148	206	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k ++cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnv vG+grrknk Pp3c17_7930V3.4.p 148 PDKLIPCPRCDSLDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTLRNVLVGAGRRKNKY 206 78999****************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	138	205	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.8E-31	150	205	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.68	152	206	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	154	190	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MSKLRKWMMK EERENSAGSA DTSAIKLFGK TIAVNSGVSD SQETSTKAGT SADAAVVHPC 60 ASQAGSEEVD GASTQSEADE MGSSICNEIR NVEAPKDAPQ ESQVSSEKLA SETMTVSTSI 120 QAPAAAVAQE KQRPLTVEEK KEQCVRKPDK LIPCPRCDSL DTKFCYYNNY NINQPRHFCK 180 SCQRYWTAGG TLRNVLVGAG RRKNKYGSSQ MKQEASEGVN SGITTVRLDH HEGAQPMLPC 240 AINPYGLKVP PMNIPQLAAS CASRQASEAQ STVTSCGKES NKVFTSASAF KPAGPDVSND 300 SVSKLRQRTR TDTPEGKDVS SPGSSPFVSE SPTSHVLTSR VQPQQQEVQQ QAMWTKSNPQ 360 LGFFNGAWPY GYSIGWSGAG PIHGTPAMCS PHPASSGTTS PPSGMCPTPG NVWTGLWASG 420 MPGMPQGMAS MSGMSGVSAM PFGWNMCPGG WTLPWRPVPA VAVQGSADVV VVNSGGFRKR 480 DGANDEGVRK MARIGSPEEV VV*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MSKLRKWMMK EERENSAGSA DTSAIKLFGK TIAVNSGVSD SQETSTKAGT SADAAVVHPC  60
ASQAGSEEVD GASTQSEADE MGSSICNEIR NVEAPKDAPQ ESQVSSEKLA SETMTVSTSI  120
QAPAAAVAQE KQRPLTVEEK KEQCVRKPDK LIPCPRCDSL DTKFCYYNNY NINQPRHFCK  180
SCQRYWTAGG TLRNVLVGAG RRKNKYGSSQ MKQEASEGVN SGITTVRLDH HEGAQPMLPC  240
AINPYGLKVP PMNIPQLAAS CASRQASEAQ STVTSCGKES NKVFTSASAF KPAGPDVSND  300
SVSKLRQRTR TDTPEGKDVS SPGSSPFVSE SPTSHVLTSR VQPQQQEVQQ QAMWTKSNPQ  360
LGFFNGAWPY GYSIGWSGAG PIHGTPAMCS PHPASSGTTS PPSGMCPTPG NVWTGLWASG  420
MPGMPQGMAS MSGMSGVSAM PFGWNMCPGG WTLPWRPVPA VAVQGSADVV VVNSGGFRKR  480
DGANDEGVRK MARIGSPEEV VV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.4342	0.0	gametophore\| protonema\| sporophyte

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB626697	0.0	AB626697.1 Physcomitrella patens PpDof1 mRNA for Dof transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024401077.1	0.0	uncharacterized protein LOC112294633
TrEMBL	H1ACS8	0.0	H1ACS8_PHYPA; Dof transcription factor
STRING	PP1S392_2V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-36	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pp3c17_7930V3.4.p

Publications ? help Back to Top
Sugiyama T, et al. Involvement of PpDof1 transcriptional repressor in the nutrient condition-dependent growth control of protonemal filaments in Physcomitrella patens. J. Exp. Bot., 2012. 63(8): p. 3185-97 [PMID:22345635]