PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_6790V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | DBB | ||||||||
Protein Properties | Length: 388aa MW: 42816 Da PI: 6.1813 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.9 | 1.6e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ ++e +++ +C+ ++ lC +C + H g H++ Pp3c17_6790V3.4.p 4 ACEFCGEGRATVYCRADSARLCLTCDRQVH-GanalaqrHSR 44 6******99*********************.54677777765 PP | |||||||
2 | zf-B_box | 19.6 | 1.9e-06 | 46 | 87 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C ++ ++ C +C++ lCe+C +e+H+ H++ Pp3c17_6790V3.4.p 46 LLCHSCNVRPAAVRCPSCHSSLCETCDDEIHNPilgtdqHQR 87 57******99*********************54777877876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.139 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.5E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.68E-7 | 5 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.2 | 43 | 90 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MQAACEFCGE GRATVYCRAD SARLCLTCDR QVHGANALAQ RHSRTLLCHS CNVRPAAVRC 60 PSCHSSLCET CDDEIHNPIL GTDQHQRRSF ECFTGCPTAT ELAMLWASQA NDVRKRGGAV 120 LASSPFKKSM QWNSWEPRIG AVALNPIAPV DVRESCTAQR TGDNFNVGAY MSGPGPPRIL 180 KKMVSVSTAK ELGHEREVFQ QLEKLQAQDP VRIIKSENLI APRKPHSSTN VLEKQEPLNN 240 YAVPAQRHVD QELVQNSRSV AYNPEAGLVQ GRVAKVEVEA DGYQRGTDGF WRNNSISQAN 300 QLWGQNMQDL GMCEEEERDL CSGFNVPDVN LSFENYEDIF ASSQAPNAAT FSACTSMEAD 360 AGRESHMQSI PESELFRVMI SSTFRLN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.8924 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400568.1 | 0.0 | uncharacterized protein LOC112294419 isoform X2 | ||||
TrEMBL | A0A2K1J2Z4 | 0.0 | A0A2K1J2Z4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S26_5V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-33 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_6790V3.4.p |