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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_6790V3.12.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | CO-like | ||||||||
Protein Properties | Length: 540aa MW: 59529.6 Da PI: 6.5714 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.2 | 2.5e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ ++e +++ +C+ ++ lC +C + H g H++ Pp3c17_6790V3.12.p 4 ACEFCGEGRATVYCRADSARLCLTCDRQVH-GanalaqrHSR 44 6******99*********************.54677777765 PP | |||||||
2 | zf-B_box | 18.9 | 3.1e-06 | 46 | 87 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C ++ ++ C +C++ lCe+C +e+H+ H++ Pp3c17_6790V3.12.p 46 LLCHSCNVRPAAVRCPSCHSSLCETCDDEIHNPilgtdqHQR 87 57******99*********************54777777776 PP | |||||||
3 | CCT | 60.7 | 4.8e-21 | 481 | 523 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ a+lRYkeK+k R+F KkirYesRKa+A+ R RvKGrFvk Pp3c17_6790V3.12.p 481 RDSAMLRYKEKKKIRRFGKKIRYESRKARADIRTRVKGRFVKV 523 899**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.139 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.5E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.45E-7 | 5 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.2 | 43 | 90 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.1E-15 | 481 | 523 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.892 | 481 | 523 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MQAACEFCGE GRATVYCRAD SARLCLTCDR QVHGANALAQ RHSRTLLCHS CNVRPAAVRC 60 PSCHSSLCET CDDEIHNPIL GTDQHQRRSF ECFTGCPTAT ELAMLWASQA NDVRKRGGAV 120 LASSPFKKSM QWNSWEPRIG AVALNPIAPV DVRESCTAQR TGDNFNVGAY MSGPGPPRIL 180 KKMVSVSTAK ELGHEREVFQ QLEKLQAQDP VRIIKSENLI APRKPHSSTN VLEKQEPLNN 240 YAVPAQRHVD QELVQNSRSV AYNPEAGLVQ GRVAKVEVEA DGYQRGTDGF WRNNSISQAN 300 QLWGQNMQDL GMCEEEERDL CSGFNVPDVN LSFENYEDIF ASSQAPNAAT FSACTSMEAD 360 AGRESHMQSI PESELFRSLA SNDQFNFQAQ LDKLGLGRHS AENEAALRLS GKALDDMDMS 420 TMNVQFTTSQ ENSGLSWTAS AVSGDSSDYV ECDLSPVLLT PSGESSLGSG SPDSVTFAQA 480 RDSAMLRYKE KKKIRRFGKK IRYESRKARA DIRTRVKGRF VKVGQACDYD PMVQPQWSL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.8924 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400562.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_024400563.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_024400565.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_024400566.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_024400567.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
TrEMBL | A0A2K1J2Z4 | 0.0 | A0A2K1J2Z4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S26_5V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 7e-33 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_6790V3.12.p |