PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_3860V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 345aa MW: 37939.9 Da PI: 6.9307 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 106.8 | 1.1e-33 | 55 | 111 | 4 | 60 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k l+cprC+s+ntkfCyynnys+sqPr++C+ C+ryWt GG+lrnvP Gg++rk+ + Pp3c17_3860V3.2.p 55 KDLPCPRCQSMNTKFCYYNNYSTSQPRHYCHDCQRYWTVGGTLRNVPPGGSCRKRTT 111 6789**************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-20 | 53 | 108 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.4E-30 | 56 | 110 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.692 | 57 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 59 | 95 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MQLPISHLSE FQETENEEIH AHLAANSGSH SHDEEEGSHS QGSKGSIGPD GNPVKDLPCP 60 RCQSMNTKFC YYNNYSTSQP RHYCHDCQRY WTVGGTLRNV PPGGSCRKRT TTVPQSSSVP 120 HFHPGTPPSS TLTGSEGESE RYQHPGSPPM MAALASMLAH PVTSGFGGFE EQFADLLSFY 180 PTQFSSLLQL AIMQQNQQDM LTSTFPDASI LASGLLMPEV FEPSHLELMH MATMLAEMQR 240 MQELARRQAA AWAEYHREGQ SAVSSGIHRQ SPQNAAAEEA AKNRQYGGSS LHRRPGFWET 300 ALRHSRPNKR RTTNPGVPES SNLSKEQGGT RAATNQPLRQ EHSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.6823 | 3e-72 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401091.1 | 0.0 | dof zinc finger protein DOF2.5-like | ||||
TrEMBL | A0A2K1J2L8 | 0.0 | A0A2K1J2L8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S26_282V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 3e-27 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_3860V3.2.p |