PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pp3c17_23930V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 710aa MW: 78642.5 Da PI: 7.7879

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_23930V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.8e-05	666	687	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++F +++L++H+r H Pp3c17_23930V3.1.p 666 ECSTCGRTF-KPDSLQVHMRGcH 687 5******.********955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	4.0E-38	10	134	IPR010369	Protein of unknown function DUF966
Pfam	PF13913	1.9E-7	664	686	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence Send to blast
MARGEDSSSV QVLYQLSWDG KLEHPHMIEV HYPPNQGGLR LRDVKKRLTT LRGHGINDSF 60 SWSSKRNYKN EFIWNDLCDD DVIQPLRGSG EYVLRASELF DTFTNKPWEH PSKHSNERMQ 120 SSRTMSVDNV TLQQGLINVK LHSGALARED DQPSGEKLCC SGRRSCINLE DCSSKGVAID 180 IPKNLQNLSV DQETIDVEKS DFCLSSSDNE VSPRLKTAAD CITPVKDVGL VVMTRSTTVH 240 GLHTPAPRSL TSPTEPPFSP GSAKRMWKKE IRKSLFRTSR NSSNVNPVLS GENAALDVDV 300 PPITLSTQED VSFWRDGRSK SASPSSLNEL REVQNEKEKE AEQSTSQLIR LLWARWTGGS 360 SKGKRTPQST CEDPLPKSPE AKQMPRSRTK TPCKEIRSTN HIAGSLPVTC PSPAVDNKAH 420 SSLDRQEIPP QEECKNRPSP MTLQSCEEIT SPVTEIEQDV EIGDIKAIVE EQASNKFPEP 480 EFQQNLRTEQ IVLSVQIPDL HIDALDSPTS DTQGSPAEAD IPKSATARVK TSNSLPRVKT 540 TTSPKPLPPG FHKGTNDTKP VQIITPRRTP RTSIPLASPP PLVRTFNRVS VRSLSSIAAI 600 TLSPENDSAA SNLSPENPIV KKRINFRERD EMPLIPGLTT LDWEKALQEA VTDCLPPPNF 660 REILQECSTC GRTFKPDSLQ VHMRGCHPPQ YARAFSARAS PHVVRSRAS*

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence Send to blast

MARGEDSSSV QVLYQLSWDG KLEHPHMIEV HYPPNQGGLR LRDVKKRLTT LRGHGINDSF  60
SWSSKRNYKN EFIWNDLCDD DVIQPLRGSG EYVLRASELF DTFTNKPWEH PSKHSNERMQ  120
SSRTMSVDNV TLQQGLINVK LHSGALARED DQPSGEKLCC SGRRSCINLE DCSSKGVAID  180
IPKNLQNLSV DQETIDVEKS DFCLSSSDNE VSPRLKTAAD CITPVKDVGL VVMTRSTTVH  240
GLHTPAPRSL TSPTEPPFSP GSAKRMWKKE IRKSLFRTSR NSSNVNPVLS GENAALDVDV  300
PPITLSTQED VSFWRDGRSK SASPSSLNEL REVQNEKEKE AEQSTSQLIR LLWARWTGGS  360
SKGKRTPQST CEDPLPKSPE AKQMPRSRTK TPCKEIRSTN HIAGSLPVTC PSPAVDNKAH  420
SSLDRQEIPP QEECKNRPSP MTLQSCEEIT SPVTEIEQDV EIGDIKAIVE EQASNKFPEP  480
EFQQNLRTEQ IVLSVQIPDL HIDALDSPTS DTQGSPAEAD IPKSATARVK TSNSLPRVKT  540
TTSPKPLPPG FHKGTNDTKP VQIITPRRTP RTSIPLASPP PLVRTFNRVS VRSLSSIAAI  600
TLSPENDSAA SNLSPENPIV KKRINFRERD EMPLIPGLTT LDWEKALQEA VTDCLPPPNF  660
REILQECSTC GRTFKPDSLQ VHMRGCHPPQ YARAFSARAS PHVVRSRAS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024401520.1	0.0	uncharacterized protein LOC112294842 isoform X1
Refseq	XP_024401521.1	0.0	uncharacterized protein LOC112294842 isoform X2
Refseq	XP_024401523.1	0.0	uncharacterized protein LOC112294842 isoform X2
TrEMBL	A0A2K1J5A5	0.0	A0A2K1J5A5_PHYPA; Uncharacterized protein
STRING	PP1S68_283V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP645	2	4

Link Out ? help Back to Top
Phytozome	Pp3c17_23930V3.1.p