PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_23300V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 342aa MW: 36618.6 Da PI: 7.5709 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121 | 4.3e-38 | 53 | 111 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + k ++cprC+s+ntkfCyynnys++qPr+fC++C+ryWt+GG+lrnvPvGgg+rk+ + Pp3c17_23300V3.3.p 53 PAKVIPCPRCESMNTKFCYYNNYSVTQPRHFCRQCQRYWTAGGTLRNVPVGGGSRKKSR 111 568899**************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-23 | 51 | 108 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.9E-33 | 55 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.518 | 57 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 59 | 95 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MQLPGHQNDS AALIGSKPQC SPNAALSGGS DAPASPSSPG SPTKIANATR EKPAKVIPCP 60 RCESMNTKFC YYNNYSVTQP RHFCRQCQRY WTAGGTLRNV PVGGGSRKKS RHPRGGAAEP 120 YLQRAGSYGV ASAGEHSIMQ NVGFQQMLTQ DMVGLNFAQL PGFVPPNTHH YVPCSMDHSD 180 GVYAPMTNKP PGQEDLSNLN VLYGTAPMGG YYPAPEMGGE NSGNAVKPEF WATSMAAPRV 240 VVPGSNPSRD GRLDSSMLLN LGLNNRSPTQ GGGNGKPMWD HQDLKPALPQ QKNGSPPHGS 300 STIEEEGSTP TNGYSNNRYE EGDTVSSMWH DMQHDLDNIF Q* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.13532 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400213.1 | 0.0 | dof zinc finger protein 1-like | ||||
TrEMBL | A0A2K1J572 | 0.0 | A0A2K1J572_PHYPA; Uncharacterized protein | ||||
STRING | PP1S68_214V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69570.1 | 2e-30 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_23300V3.3.p |