PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_1930V3.1.p | ||||||||
Common Name | PHYPADRAFT_98143 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 1184aa MW: 133920 Da PI: 8.7666 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.1 | 1.4e-17 | 46 | 129 | 9 | 99 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++++v+p ++ hg + +l +sg++W+v + ++++++ ++ GW+ F+ +ngL+ gD++vF+l+g+sef v++f++ Pp3c17_1930V3.1.p 46 AAMATCWMVIPSAWLKLHGDEVG--NSAVLHGPSGNTWQVGV---GRPKWVAFRVGWRTFAADNGLEKGDILVFTLIGKSEF--AVRIFDN 129 56789**********99976644..47***************...9999*****************************9999..9999986 PP | |||||||
2 | B3 | 54.5 | 2.2e-17 | 396 | 483 | 9 | 99 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +v+ ++ +++p +f ++h+ +++++ + l d++g +W ++ r + ++ lt+GW++F+ a gL egD+++F+l++ ++ +l+++vfr+ Pp3c17_1930V3.1.p 396 HVHGRAFVRFPVTFGKQHM--PRKTVSMHLLDSHGHRWPMTW-LRDNETHMGLTRGWRDFCLAEGLLEGDVCIFELIELNKLTLLIHVFRS 483 6677788999********8..557889***************.466666789*************************88**********97 PP | |||||||
3 | B3 | 43.1 | 7.8e-14 | 819 | 905 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 vl++s+v k+ ++ + +f+++ + ++e + + l+d g++ +v l ++ ltkGW++F ++ L+egD++vF+l+++s+++ +v+ Pp3c17_1930V3.1.p 819 VLKSSNVYKTYIVEILPEFCRQLS--PNERVHIFLRDAAGNKTRVLL--TQEA----LTKGWRQFSLEHLLEEGDVCVFELIDTSRRTILVH 902 68899999999999******9886..457789***************..6665....*************************99******** PP EE- CS B3 96 vfr 98 +fr Pp3c17_1930V3.1.p 903 IFR 905 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-20 | 32 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.5E-20 | 33 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.02E-20 | 34 | 128 | No hit | No description |
SMART | SM01019 | 7.2E-11 | 40 | 130 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 48 | 129 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.393 | 53 | 130 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-18 | 382 | 483 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-21 | 385 | 485 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.451 | 388 | 484 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.5E-12 | 388 | 484 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.66E-19 | 391 | 482 | No hit | No description |
Pfam | PF02362 | 1.7E-15 | 396 | 483 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-17 | 809 | 905 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-17 | 809 | 905 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.193 | 816 | 907 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.2E-8 | 816 | 907 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.49E-13 | 817 | 905 | No hit | No description |
Pfam | PF02362 | 2.0E-11 | 818 | 905 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 1184 aa Download sequence Send to blast |
MDKIPHGFRP CLSCTRSCYQ EHWPLQSRDT FRSPCFMRAL CDSNLAAMAT CWMVIPSAWL 60 KLHGDEVGNS AVLHGPSGNT WQVGVGRPKW VAFRVGWRTF AADNGLEKGD ILVFTLIGKS 120 EFAVRIFDNK TGLEKESALT ATNTGCYDSK SPSSLGVKRK QRDDDENAAE LKRICAHNNG 180 VQLVHNDQSI DSTHTEKVLQ QRRAKSSTFS SAAALISYGE CALLDLNSQP LYLHQNPTSG 240 NGNFFPEIDH QLLDAVVART FQGYASGIVY QPHPISIRSQ DVGEECHVQG QSKAQVCGSG 300 GLGPATRFAS QRRPVMDARE RSTEFPHRQN NSPTVIPSHH RSQILDLNKE HFSDDVVPHM 360 LSPDVILERE KALELARRAQ ESIDRPSHLV VLRAFHVHGR AFVRFPVTFG KQHMPRKTVS 420 MHLLDSHGHR WPMTWLRDNE THMGLTRGWR DFCLAEGLLE GDVCIFELIE LNKLTLLIHV 480 FRSSETRDSN HVIITKPKRP ELLQMQHLSH KKCSDRKRKV VDKGDGRRQR KADSLADKDA 540 LPTSSEGQYP CTPTKLALYK AFHRTTHTDS VGPSRVCNRR QDSFAAGSVG RERLKKLSLW 600 ASKVQGGMYS SSKKISCESE SVAGTSLERC CKDDEELTDS VMSKTQDATF SEILCQMSSG 660 CVGANNSRNC RNSPGWVRTS TLSTGLIEKD EKSSAVESRG FECQHFHEQD CTRKRHHINA 720 ARRHEIRGGS GKLVSNTFKH WAKARKRCET YGKTEETRTW GWKWYTPDYS VLRRRMQVLN 780 RNSRFYIASR RTPVTDAQKE AAKEAALAMK TENPATMVVL KSSNVYKTYI VEILPEFCRQ 840 LSPNERVHIF LRDAAGNKTR VLLTQEALTK GWRQFSLEHL LEEGDVCVFE LIDTSRRTIL 900 VHIFRVVDVD YINGNYRNHY RIISAGFQRT QRPLVKCGLK IQANGQVVNE VATKLSFQAR 960 RNSVNRSLYL AILKTRDNLR KPRPVEDDNP YYTKEHMDLN LDLDTSTVPP PALNTLWDSP 1020 SCTMSTSCAS RSPVLKLYPE LDSALMITKN DSSQLCPMSD SLLRLPVVTP PSSGTALADI 1080 CEISSCKNRQ QQTMLYPEND TMVGMPLPLP PDEDDSEPEE GNYYRVVRIL KKRYFDNEKQ 1140 YLAELDGPVV QSDGCRGVRE YDDMKWWIPE KSFSPGFTSC YLR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400313.1 | 0.0 | uncharacterized protein LOC112294259 | ||||
Refseq | XP_024400314.1 | 0.0 | uncharacterized protein LOC112294259 | ||||
Refseq | XP_024400315.1 | 0.0 | uncharacterized protein LOC112294259 | ||||
Refseq | XP_024400316.1 | 0.0 | uncharacterized protein LOC112294259 | ||||
TrEMBL | A9TWB4 | 0.0 | A9TWB4_PHYPA; Predicted protein | ||||
STRING | PP1S344_29V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-12 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_1930V3.1.p |
Entrez Gene | 5946107 |
Publications ? help Back to Top | |||
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