PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_18340V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 180aa MW: 20629.4 Da PI: 8.9602 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 27.3 | 7.4e-09 | 23 | 57 | 4 | 37 |
zf-Dof 4 kalkcprCds.tntkfCyynnyslsqPryfCkaCr 37 +++ cprC+s t+ +f nn s +qPry C++C+ Pp3c17_18340V3.1.p 23 QIKVCPRCKSsTHVRFLDLNNKSPKQPRYRCRKCK 57 5678****963789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 8.6E-4 | 19 | 57 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF02701 | 4.3E-9 | 24 | 59 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MRLLHWKGYL QIPILEPIEF MVQIKVCPRC KSSTHVRFLD LNNKSPKQPR YRCRKCKLNF 60 SPFKTRGQVP KKVTNEAVQA MDTSTELIDA PDQVSQLLAL YEISENLIQG IELLESTLDL 120 LQWKHGLWIV LGDCPMTWVP LLFFLRTKRM VVLQCLGRSL RPAALTHTGF SLETCVSEC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | PP1S65_66V6.1 | 1e-130 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_18340V3.1.p |