PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_18340V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 180aa MW: 20629.4 Da PI: 8.9602

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_18340V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	27.3	7.4e-09	23	57	4	37
zf-Dof 4 kalkcprCds.tntkfCyynnyslsqPryfCkaCr 37 +++ cprC+s t+ +f nn s +qPry C++C+ Pp3c17_18340V3.1.p 23 QIKVCPRCKSsTHVRFLDLNNKSPKQPRYRCRKCK 57 5678**963789******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	8.6E-4	19	57	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF02701	4.3E-9	24	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MRLLHWKGYL QIPILEPIEF MVQIKVCPRC KSSTHVRFLD LNNKSPKQPR YRCRKCKLNF 60 SPFKTRGQVP KKVTNEAVQA MDTSTELIDA PDQVSQLLAL YEISENLIQG IELLESTLDL 120 LQWKHGLWIV LGDCPMTWVP LLFFLRTKRM VVLQCLGRSL RPAALTHTGF SLETCVSEC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	PP1S65_66V6.1	1e-130	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c17_18340V3.1.p