 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pp3c17_18190V3.4.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 292aa MW: 33154.7 Da PI: 4.8015 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c17_18190V3.4.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.8 | 3.7e-18 | 40 | 92 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++ +q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV vWFqNrRa++k
Pp3c17_18190V3.4.p 40 KRRLSFDQVRSLERNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 92
4578889*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 122.3 | 2.4e-39 | 38 | 130 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrls +qv++LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+k kqlE+dye+L + y++lk++ e++ k++++L++e+
Pp3c17_18190V3.4.p 38 EKKRRLSFDQVRSLERNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKIKQLERDYETLTQDYNRLKSDFEAVLKDKKNLKDEV 128
69**************************************************************************************999 PP
HD-ZIP_I/II 92 ke 93
++
Pp3c17_18190V3.4.p 129 NR 130
75 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009637 | Biological Process | response to blue light |
| GO:0030308 | Biological Process | negative regulation of cell growth |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MSAGCGQKRP YYAAYENHSS EEPEDVDEGV DEFSHHVEKK RRLSFDQVRS LERNFEVENK 60
LEPERKMQLA KELGLQPRQV AVWFQNRRAR WKIKQLERDY ETLTQDYNRL KSDFEAVLKD 120
KKNLKDEVNR LKGITTEEEK NVDASEPTQC SSQPASPAQS EKSDIVTSKV RSTPTIDVLP 180
GAAKEPNERS VKRTMSSDSY SSDVMDAESP RTGDSSNPNL PTDAPWVQYH HPQFPPESFV 240
GPTPNPQLAG VGDTLSLQVK LEEMAGFPTD QAFLLSQLEN QTVLPNWWDW A*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB028080 | 1e-42 | AB028080.2 Physcomitrella patens mRNA for homeobox protein PpHB9, complete cds. |
