 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pp3c17_18190V3.3.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 309aa MW: 34965.8 Da PI: 4.7016 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c17_18190V3.3.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.7 | 4.1e-18 | 57 | 109 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++ +q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV vWFqNrRa++k
Pp3c17_18190V3.3.p 57 KRRLSFDQVRSLERNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 109
4578889*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 122.1 | 2.7e-39 | 55 | 147 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrls +qv++LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+k kqlE+dye+L + y++lk++ e++ k++++L++e+
Pp3c17_18190V3.3.p 55 EKKRRLSFDQVRSLERNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKIKQLERDYETLTQDYNRLKSDFEAVLKDKKNLKDEV 145
69**************************************************************************************999 PP
HD-ZIP_I/II 92 ke 93
++
Pp3c17_18190V3.3.p 146 NR 147
75 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009637 | Biological Process | response to blue light |
| GO:0030308 | Biological Process | negative regulation of cell growth |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MLVPCNAVPR SLGDLEDMSA GCGQKRPYYA AYENHSSEEP EDVDEGVDEF SHHVEKKRRL 60
SFDQVRSLER NFEVENKLEP ERKMQLAKEL GLQPRQVAVW FQNRRARWKI KQLERDYETL 120
TQDYNRLKSD FEAVLKDKKN LKDEVNRLKG ITTEEEKNVD ASEPTQCSSQ PASPAQSEKS 180
DIVTSKVRST PTIDVLPGAA KEPNERSVKR TMSSDSYSSD VMDAESPRTG DSSNPNLPTD 240
APWVQYHHPQ FPPESFVGPT PNPQLAGVGD TLSLQVKLEE MAGFPTDQAF LLSQLENQTV 300
LPNWWDWA*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 103 | 111 | RRARWKIKQ |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB028080 | 1e-42 | AB028080.2 Physcomitrella patens mRNA for homeobox protein PpHB9, complete cds. |
