 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pp3c17_18130V3.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 351aa MW: 38472.7 Da PI: 4.7484 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c17_18130V3.1.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.4 | 2.5e-18 | 93 | 145 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++ +q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV vWFqNrRa++k
Pp3c17_18130V3.1.p 93 KRRLSFDQVRSLERSFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 145
4578889*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 119.6 | 1.6e-38 | 91 | 183 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrls +qv++LE+sFe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye+L + y +lk++ e+ +e++ L++e+
Pp3c17_18130V3.1.p 91 EKKRRLSFDQVRSLERSFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYEMLNSGYIKLKADFETALREKDVLKAEV 181
69**************************************************************************************999 PP
HD-ZIP_I/II 92 ke 93
++
Pp3c17_18130V3.1.p 182 QR 183
86 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MAMAATGLSS FGGQNVMLMR NDMGSSNSLV AMLNSCNPHV SFQVSRLGGG LEDAIAGCGQ 60
KRPFFPTFGN GPGEEPEDGD DGGDDGSQPV EKKRRLSFDQ VRSLERSFEV ENKLEPERKM 120
QLAKELGLQP RQVAVWFQNR RARWKTKQLE RDYEMLNSGY IKLKADFETA LREKDVLKAE 180
VQRLSGKTSP QGSQSSQSAD SSQCESDSHC MPDTEESPKL GKKPYNLAIT KDHHHTRSSP 240
TMTVCSTPKL EVEKTSTSSG SNSSDLLDAD SPHTSDSNPS DEEKLACCSQ FPPPESLVGP 300
LGVDDDVNAS QQSFPVKLEE GCHAFQVDPN CGYFFAPAVE QSVLPWWDWP *
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 139 | 147 | RRARWKTKQ |
