PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_1780V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRF
Protein Properties Length: 669aa    MW: 70381.4 Da    PI: 8.6226
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_1780V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.94.3e-24238281144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+epgrCrRtDGKkWRC r+v++++k+CErH+hrgr+rsr++ e
  Pp3c17_1780V3.5.p 238 DPEPGRCRRTDGKKWRCARDVVPDQKYCERHMHRGRHRSRRPAE 281
                        79**************************************9876 PP
2QLQ552.4e-19173208237
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        +FT +Q+++L++Q+l++Ky++a++ vP+eLl +i+k
  Pp3c17_1780V3.5.p 173 PFTTSQWAELEHQALIFKYMMAGVNVPQELLNPIRK 208
                        9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-10172208IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.542173208IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-14173207IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.77238282IPR014977WRC domain
PfamPF088792.6E-20239279IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MHTMSSPNSP GSLSPNNHLS SSKHCRSASE MDLEDRRGGG PLKMARTDSF HRQSDLKMHM  60
NGSPSGTMVL SSSMVSDGRL GCSPTNSCAS DGSLLGNDHG NVVSDARLLR QDSLVSASTY  120
SGGQGCGRPL SYHHLQSSAY HYKPSGGGLS MGRENMNHMG QSVHNPVSGA RAPFTTSQWA  180
ELEHQALIFK YMMAGVNVPQ ELLNPIRKSV ATMNSLSSHH TTNLVWGAFH LGVPNNTDPE  240
PGRCRRTDGK KWRCARDVVP DQKYCERHMH RGRHRSRRPA EGQTSSASQS GSATSSGPQP  300
AIAVGASRTS TPTPGSSLTH SNLRPSILSG NSQSTPNLGG GGMGYNSPGG SGGLSGGSSP  360
AASSGQFQLP GLSSAAGTSG LTSKDYRYMN GMTVKSEMGM GPEQILFSEA SGSTRGLSQE  420
AQSLSNLSRL NTTMNKSWQT MTSSKVLPAA QPKGSGNSSL LSYNSSQMGG LLGQEFGLMP  480
EASQVNLAAM AASQQQHSFL SNGYGGVEST SVGRESSEGQ PLRHFFDDWP RSRDPSALAW  540
GSDVEDSDRT TSAGRGGQSN HTSNNTQLSI SIPMTAAPSG DFNSQSSGGS PSRDLNLLAD  600
EWFNYHCKKS SFSVQILPSD HVASPVDVLQ RSTFASPYDS SCSNSSASSP RSTVPLDPAS  660
VTSESKTV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.22390.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400508.10.0growth-regulating factor 4-like isoform X2
TrEMBLA0A2K1J2E50.0A0A2K1J2E5_PHYPA; Uncharacterized protein
STRINGPP1S344_39V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.16e-34growth-regulating factor 2