PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_17640V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 481aa MW: 50676.6 Da PI: 6.7221

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_17640V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	217	239	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F ++ L H++ H Pp3c17_17640V3.4.p 217 YECQFCGREFASSQALGGHQNAH 239 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.42E-6	213	244	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.3E-5	215	243	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.695	217	244	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.3E-5	217	241	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	219	239	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MNDTNRSRSL ASPYRHSMSN GSRNGGPELD AQSLDITLAG LSAQSGSATS DRRCSHLPSQ 60 TCGGHASVDT QFDVGPGNSA ACVGMSQDGP SLRLLNGAAN RDSAGKAVKL FGFDIKHPSP 120 AEMNGGESSL SAAQNTVENP SLRDQVPCEG DESQSPASGS VACDTDAAPD SVANDAAQEQ 180 CDDNAGECGG GSSTHVSTEQ TNDCSDSTAP LWENRKYECQ FCGREFASSQ ALGGHQNAHK 240 RERQEAKRAQ FHANRIAAAN SDRSSGWGGR GGYGIRQSHT GQQFVTPHVS RLVAPHSSQL 300 PRSHGSPGPQ LMPLHVAAAS MSSYEDMTPM AHGMSLMNVG VPNGTFPHPM THGMQCPPSP 360 YVFYYGPLAM NFPGSRPTFP SMYGDYMRYT EYPNMFAVPS QGMHLPQPWS HSQSQPGSLP 420 SARFPLKGSD GVRTENVIRP RPLAHAPGTL QTQQQRPLSG GGASNNVLDL QLGLGNSPAG 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MNDTNRSRSL ASPYRHSMSN GSRNGGPELD AQSLDITLAG LSAQSGSATS DRRCSHLPSQ  60
TCGGHASVDT QFDVGPGNSA ACVGMSQDGP SLRLLNGAAN RDSAGKAVKL FGFDIKHPSP  120
AEMNGGESSL SAAQNTVENP SLRDQVPCEG DESQSPASGS VACDTDAAPD SVANDAAQEQ  180
CDDNAGECGG GSSTHVSTEQ TNDCSDSTAP LWENRKYECQ FCGREFASSQ ALGGHQNAHK  240
RERQEAKRAQ FHANRIAAAN SDRSSGWGGR GGYGIRQSHT GQQFVTPHVS RLVAPHSSQL  300
PRSHGSPGPQ LMPLHVAAAS MSSYEDMTPM AHGMSLMNVG VPNGTFPHPM THGMQCPPSP  360
YVFYYGPLAM NFPGSRPTFP SMYGDYMRYT EYPNMFAVPS QGMHLPQPWS HSQSQPGSLP  420
SARFPLKGSD GVRTENVIRP RPLAHAPGTL QTQQQRPLSG GGASNNVLDL QLGLGNSPAG  480
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400973.1	0.0	uncharacterized protein LOC112294583 isoform X1
Refseq	XP_024400974.1	0.0	uncharacterized protein LOC112294583 isoform X1
TrEMBL	A0A2K1J4C9	0.0	A0A2K1J4C9_PHYPA; Uncharacterized protein
STRING	PP1S173_9V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	1e-13	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pp3c17_17640V3.4.p