PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_17640V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 482aa    MW: 50807.8 Da    PI: 6.7221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_17640V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029218240123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ Cg+ F ++  L  H++ H
  Pp3c17_17640V3.3.p 218 YECQFCGREFASSQALGGHQNAH 240
                         99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-6214245No hitNo description
Gene3DG3DSA:3.30.160.605.3E-5216244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.695218245IPR007087Zinc finger, C2H2
PfamPF139121.3E-5218242IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MMNDTNRSRS LASPYRHSMS NGSRNGGPEL DAQSLDITLA GLSAQSGSAT SDRRCSHLPS  60
QTCGGHASVD TQFDVGPGNS AACVGMSQDG PSLRLLNGAA NRDSAGKAVK LFGFDIKHPS  120
PAEMNGGESS LSAAQNTVEN PSLRDQVPCE GDESQSPASG SVACDTDAAP DSVANDAAQE  180
QCDDNAGECG GGSSTHVSTE QTNDCSDSTA PLWENRKYEC QFCGREFASS QALGGHQNAH  240
KRERQEAKRA QFHANRIAAA NSDRSSGWGG RGGYGIRQSH TGQQFVTPHV SRLVAPHSSQ  300
LPRSHGSPGP QLMPLHVAAA SMSSYEDMTP MAHGMSLMNV GVPNGTFPHP MTHGMQCPPS  360
PYVFYYGPLA MNFPGSRPTF PSMYGDYMRY TEYPNMFAVP SQGMHLPQPW SHSQSQPGSL  420
PSARFPLKGS DGVRTENVIR PRPLAHAPGT LQTQQQRPLS GGGASNNVLD LQLGLGNSPA  480
G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400973.10.0uncharacterized protein LOC112294583 isoform X1
RefseqXP_024400974.10.0uncharacterized protein LOC112294583 isoform X1
TrEMBLA0A2K1J4C90.0A0A2K1J4C9_PHYPA; Uncharacterized protein
STRINGPP1S173_9V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.11e-13C2H2 family protein