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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_17000V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 402aa MW: 41452.2 Da PI: 7.6675 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.1e-12 | 212 | 257 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P++ K +Ka++L + ++Y+k Lq Pp3c17_17000V3.2.p 212 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 257 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.72E-13 | 205 | 261 | No hit | No description |
SuperFamily | SSF47459 | 4.71E-17 | 205 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.453 | 207 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 209 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-9 | 212 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-14 | 213 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MAQQPSTTMM MAMQQQQGFG VGGMPSAVGL SKKGNEEVDY GLSEVQIRHH QQQSAGARGE 60 SGSGGMPVVR EARNGAPDTL TRSVSLGSSA SEESGPQQGK GDQLMGSMVA PSKHLQQPYG 120 GAGSGVPTLP MNFAPAKAEN VMLVGEMDSH NAHGKRFRED EDGRPRPTGA MPPGGCQGSG 180 YANPGVPAGQ SLPGMGARPR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNSNKT 240 DKASMLDEII DYVKFLQLQV KVLSMSRLGG AGALVNSDPP AEGGNNFAAS AGSSGVSNPA 300 QDGLASALTE RQVTRMMEDD MGAAMQYLQS KGLCLMPISL ATAISTTNKG PAQANANTGD 360 RQGSAAASNI GKSTAGSSLA GGSKEDGSEA GRVTESTTQD T* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 221 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4976 | 0.0 | protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401108.1 | 0.0 | transcription factor UNE12-like | ||||
TrEMBL | A0A2K1J4A1 | 0.0 | A0A2K1J4A1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S173_83V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 8e-55 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_17000V3.2.p |