PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_16470V3.1.p | ||||||||
Common Name | PpABI3B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 516aa MW: 57312.7 Da PI: 5.9089 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.6 | 9.3e-18 | 297 | 391 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 +k+l psdv+++gr++lpkk ae+h + e++ l++ed sg W++++++ ++ks++y+l+ ++ eFvk+++L+egD +v++ + Pp3c17_16470V3.1.p 297 QKELRPSDVGNLGRIILPKKEAEAHlpilALR--EGILLQMEDfDSGHCWKIRYRFwpNNKSRMYLLE-NTGEFVKSHRLEEGDLLVLYKI 384 7999***********************76555..7889*****9999*******99777777777777.********************44 PP SSSEE..EE CS B3 86 grsefelvv 94 +e+++v+ Pp3c17_16470V3.1.p 385 --QEGNYVL 391 ..4555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-27 | 288 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.75E-24 | 294 | 387 | No hit | No description |
SuperFamily | SSF101936 | 3.34E-22 | 295 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.052 | 296 | 397 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-18 | 296 | 397 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-14 | 297 | 392 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010116 | Biological Process | positive regulation of abscisic acid biosynthetic process | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010373 | Biological Process | negative regulation of gibberellin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MDGNVRAVLK KVTVNEDSLS QAIQALGGGE KGLKELIGHI MLWVKQHNGE MDYGKTSLSQ 60 KLEKLHPPQM NHALEFASGK GISGTVYNPN LASEGYDQRN EKSPCPFVRV QSSEDLQDMN 120 HLFQCIKSRR LMGEGGLDIN FPRDVHSGSG TFVDVRGSVP DVLHFPSGGM GPRSPNHIGP 180 AMLQGMPCEL DIQRPLIPCA QAGLSFSGEH DGLSRIFTAT TRAARRNQIS RQRQSGLQSN 240 STFTPSNTVT AVSSECGLWS VAPPAWDMSV GVFLSRTQSP SCGPDISDPK MLTFLLQKEL 300 RPSDVGNLGR IILPKKEAEA HLPILALREG ILLQMEDFDS GHCWKIRYRF WPNNKSRMYL 360 LENTGEFVKS HRLEEGDLLV LYKIQEGNYV LRAQKKVHSE SSGAPGSQQK NAYSLARDFP 420 EASKTEEPLK EKDIVGFAEW SCGKVNEERN ILVRDDDPFF KDDQKHKISS SFSPEPLQSL 480 ERFPSLSIDF PLDEMMPWDD PDEFNTDSEL AELVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-35 | 292 | 400 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-35 | 292 | 400 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3116 | 0.0 | gametophore| protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00382 | DAP | Transfer from AT3G26790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB233420 | 0.0 | AB233420.1 Physcomitrella patens PpABI3B mRNA for transcription factor ABI3-like, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401493.1 | 0.0 | B3 domain-containing protein VP1-like | ||||
TrEMBL | A0A2K1J469 | 0.0 | A0A2K1J469_PHYPA; Uncharacterized protein | ||||
STRING | PP1S173_143V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP788 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 4e-39 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_16470V3.1.p |