PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_16470V3.1.p
Common NamePpABI3B
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 516aa    MW: 57312.7 Da    PI: 5.9089
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_16470V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.3e-18297391294
                         EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         +k+l psdv+++gr++lpkk ae+h     +   e++ l++ed  sg  W++++++  ++ks++y+l+ ++ eFvk+++L+egD +v++ +
  Pp3c17_16470V3.1.p 297 QKELRPSDVGNLGRIILPKKEAEAHlpilALR--EGILLQMEDfDSGHCWKIRYRFwpNNKSRMYLLE-NTGEFVKSHRLEEGDLLVLYKI 384
                         7999***********************76555..7889*****9999*******99777777777777.********************44 PP

                         SSSEE..EE CS
                  B3  86 grsefelvv 94 
                           +e+++v+
  Pp3c17_16470V3.1.p 385 --QEGNYVL 391
                         ..4555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-27288392IPR015300DNA-binding pseudobarrel domain
CDDcd100177.75E-24294387No hitNo description
SuperFamilySSF1019363.34E-22295391IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.052296397IPR003340B3 DNA binding domain
SMARTSM010193.2E-18296397IPR003340B3 DNA binding domain
PfamPF023622.0E-14297392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MDGNVRAVLK KVTVNEDSLS QAIQALGGGE KGLKELIGHI MLWVKQHNGE MDYGKTSLSQ  60
KLEKLHPPQM NHALEFASGK GISGTVYNPN LASEGYDQRN EKSPCPFVRV QSSEDLQDMN  120
HLFQCIKSRR LMGEGGLDIN FPRDVHSGSG TFVDVRGSVP DVLHFPSGGM GPRSPNHIGP  180
AMLQGMPCEL DIQRPLIPCA QAGLSFSGEH DGLSRIFTAT TRAARRNQIS RQRQSGLQSN  240
STFTPSNTVT AVSSECGLWS VAPPAWDMSV GVFLSRTQSP SCGPDISDPK MLTFLLQKEL  300
RPSDVGNLGR IILPKKEAEA HLPILALREG ILLQMEDFDS GHCWKIRYRF WPNNKSRMYL  360
LENTGEFVKS HRLEEGDLLV LYKIQEGNYV LRAQKKVHSE SSGAPGSQQK NAYSLARDFP  420
EASKTEEPLK EKDIVGFAEW SCGKVNEERN ILVRDDDPFF KDDQKHKISS SFSPEPLQSL  480
ERFPSLSIDF PLDEMMPWDD PDEFNTDSEL AELVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-352924001110B3 domain-containing transcription factor FUS3
6j9b_D2e-352924001110B3 domain-containing transcription factor FUS3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.31160.0gametophore| protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2334200.0AB233420.1 Physcomitrella patens PpABI3B mRNA for transcription factor ABI3-like, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401493.10.0B3 domain-containing protein VP1-like
TrEMBLA0A2K1J4690.0A0A2K1J469_PHYPA; Uncharacterized protein
STRINGPP1S173_143V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.14e-39B3 family protein