PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_16430V3.2.p
Common NamePHYPADRAFT_88752
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 872aa    MW: 96807.4 Da    PI: 9.1071
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_16430V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12e-105996632796
                         ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         ++ ++ + +l+l+d++g   +v    r +  ry+ ++GWk+Fv+ +++++gD++v++  +++ fe++v +
  Pp3c17_16430V3.2.p 599 EILPTVPAELILMDTDGVMRKVDW--RPGL-RYLYGQGWKDFVETHNIQAGDVCVLE--KTDMFEYKVLI 663
                         4445567789*******9999999..6665.8999**********************..44555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-1234132IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-1034126No hitNo description
SMARTSM010190.002736128IPR003340B3 DNA binding domain
PROSITE profilePS508639.33338128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-1045126IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0088567669IPR003340B3 DNA binding domain
SuperFamilySSF1019361.8E-13572671IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-8593667No hitNo description
Gene3DG3DSA:2.40.330.106.0E-10598671IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-7599663IPR003340B3 DNA binding domain
PROSITE profilePS508639.009607669IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MGEGGGSGGE HKVCAACIRV CQTTHGTGLP LIVPRFLKTI PEYSTPSNKN CNLKIPAVYI  60
REYIGMYSNE TYILEDVTGF EWVVTFSSAA LRDGWKAFAI DYQLEKGDQI MLGLLAMKRF  120
SVNVFNKFGL EKVSTRQPLN RRSSTGTVID KETELLPLVS KPMRGVAEDP PLNLVHSKAT  180
NRREKLNGSP QHDSQMPESN SFCSVLPAEA SDQNENKVTK GILRSRGSFE WNLLHEQVDR  240
DEAKTSVMNM SSEESEDSVQ VLLAKAILAK AKQRRLKKRK MAFAGTSPVE TRTEATYSER  300
IFRNEVSKIF EDKIRAMNLK SRNVGMASSG SAGLSSGDLI DSLKNDFAAS HYDTGAVKSR  360
EDPKVSMNGN NDHDVEVSQV DVCHRRYEPQ NQNEITDQLG VVKEISLPDH RQTEVRTQTK  420
TARVEIEDDP MRRRVEIRQV GVLRSEPGGR DQPISVFQPA LVKQEPSLSL GNNLGSAMAA  480
ARAHSHDNEK SANCGFATVA ANHRFGAVTL VGPRTREYRN LKRDYMTSED QEPPDAISPN  540
SNAPSSLAGD NKLRESQKQA YEVAKAFSVN TKNPSALLLM RTRASKNTYT CFVSVECAEI  600
LPTVPAELIL MDTDGVMRKV DWRPGLRYLY GQGWKDFVET HNIQAGDVCV LEKTDMFEYK  660
VLIHVFRSND IERVSPAQAP AATPKFGASP GGKFRAEGKR DRRANSPLLP CTDKFRKCLT  720
KAPTNGVEEG ELPKSADVES AGVKRPGSFR EREGAARRGS AGQSLFATHA QIRKVAEAGT  780
RSSPPSAVVD KQQEQQATPS QDARKHYVVQ KLIDRRKSLQ GLVFLVEINE EIMPLVGSKK  840
KTKIGATQDE RGRWWVPHHH FNFDFSSCYI E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272279QRRLKKRK
2273279RRLKKRK
3273280RRLKKRKM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401130.10.0uncharacterized protein LOC112294658
TrEMBLA0A2K1J4730.0A0A2K1J473_PHYPA; Uncharacterized protein
STRINGPP1S173_152V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]