PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_16430V3.2.p | ||||||||
Common Name | PHYPADRAFT_88752 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 872aa MW: 96807.4 Da PI: 9.1071 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.1 | 2e-10 | 599 | 663 | 27 | 96 |
---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ ++ + +l+l+d++g +v r + ry+ ++GWk+Fv+ +++++gD++v++ +++ fe++v + Pp3c17_16430V3.2.p 599 EILPTVPAELILMDTDGVMRKVDW--RPGL-RYLYGQGWKDFVETHNIQAGDVCVLE--KTDMFEYKVLI 663 4445567789*******9999999..6665.8999**********************..44555555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.12E-12 | 34 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.23E-10 | 34 | 126 | No hit | No description |
SMART | SM01019 | 0.0027 | 36 | 128 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.333 | 38 | 128 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-10 | 45 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0088 | 567 | 669 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.8E-13 | 572 | 671 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.79E-8 | 593 | 667 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-10 | 598 | 671 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-7 | 599 | 663 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.009 | 607 | 669 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0030003 | anatomy | protonema |
Sequence ? help Back to Top |
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Protein Sequence Length: 872 aa Download sequence Send to blast |
MGEGGGSGGE HKVCAACIRV CQTTHGTGLP LIVPRFLKTI PEYSTPSNKN CNLKIPAVYI 60 REYIGMYSNE TYILEDVTGF EWVVTFSSAA LRDGWKAFAI DYQLEKGDQI MLGLLAMKRF 120 SVNVFNKFGL EKVSTRQPLN RRSSTGTVID KETELLPLVS KPMRGVAEDP PLNLVHSKAT 180 NRREKLNGSP QHDSQMPESN SFCSVLPAEA SDQNENKVTK GILRSRGSFE WNLLHEQVDR 240 DEAKTSVMNM SSEESEDSVQ VLLAKAILAK AKQRRLKKRK MAFAGTSPVE TRTEATYSER 300 IFRNEVSKIF EDKIRAMNLK SRNVGMASSG SAGLSSGDLI DSLKNDFAAS HYDTGAVKSR 360 EDPKVSMNGN NDHDVEVSQV DVCHRRYEPQ NQNEITDQLG VVKEISLPDH RQTEVRTQTK 420 TARVEIEDDP MRRRVEIRQV GVLRSEPGGR DQPISVFQPA LVKQEPSLSL GNNLGSAMAA 480 ARAHSHDNEK SANCGFATVA ANHRFGAVTL VGPRTREYRN LKRDYMTSED QEPPDAISPN 540 SNAPSSLAGD NKLRESQKQA YEVAKAFSVN TKNPSALLLM RTRASKNTYT CFVSVECAEI 600 LPTVPAELIL MDTDGVMRKV DWRPGLRYLY GQGWKDFVET HNIQAGDVCV LEKTDMFEYK 660 VLIHVFRSND IERVSPAQAP AATPKFGASP GGKFRAEGKR DRRANSPLLP CTDKFRKCLT 720 KAPTNGVEEG ELPKSADVES AGVKRPGSFR EREGAARRGS AGQSLFATHA QIRKVAEAGT 780 RSSPPSAVVD KQQEQQATPS QDARKHYVVQ KLIDRRKSLQ GLVFLVEINE EIMPLVGSKK 840 KTKIGATQDE RGRWWVPHHH FNFDFSSCYI E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 272 | 279 | QRRLKKRK |
2 | 273 | 279 | RRLKKRK |
3 | 273 | 280 | RRLKKRKM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401130.1 | 0.0 | uncharacterized protein LOC112294658 | ||||
TrEMBL | A0A2K1J473 | 0.0 | A0A2K1J473_PHYPA; Uncharacterized protein | ||||
STRING | PP1S173_152V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_16430V3.2.p |
Entrez Gene | 5937410 |
Publications ? help Back to Top | |||
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