PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_16170V3.2.p | ||||||||
Common Name | PHYPADRAFT_100669 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 579aa MW: 64604.6 Da PI: 9.8107 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.5 | 8.8e-17 | 49 | 141 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k++ ++ + k + l +p +f+++ +++ +kt++le +s ++W+v++ + + ++++ +++GW++Fvk+++L+ gD + F+l+++s Pp3c17_16170V3.2.p 49 FLKKM-TEVAIK-SKLQMPVSFVRNS--VTRIGKTIILEGPSTNKWSVEV-WpgSVQKRSLEFRDGWQKFVKDHNLQIGDQLCFTLTSDSH 134 66777.444444.45999*****544..567999****************.66666667799************************99999 PP E..EEEEE- CS B3 90 felvvkvfr 98 f v+v++ Pp3c17_16170V3.2.p 135 F--QVMVYD 141 9..666665 PP | |||||||
2 | B3 | 58.4 | 1.3e-18 | 293 | 386 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 v+t+++v k ++vl k f ++h+ ++es+++tl ++ g sW vk ++ + ++ +++GW++F+ +n+L+e D++vF++++++ f +v Pp3c17_16170V3.2.p 293 VMTKAYVYKGFWMVLNKVFSNAHM--PHESREVTLCNKAGHSWPVKWLFKTTTNSSGFSGGWRGFALDNRLEESDVCVFEMVDEKYFVILV 381 7899***************99997..55888******************99999999***********************9999***9999 PP EEE-S CS B3 95 kvfrk 99 ++fr+ Pp3c17_16170V3.2.p 382 HLFRA 386 99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-21 | 46 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.281 | 47 | 143 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.18E-21 | 47 | 141 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-20 | 47 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.6E-14 | 49 | 140 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-7 | 49 | 143 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-20 | 286 | 385 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-24 | 287 | 387 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.83E-24 | 288 | 385 | No hit | No description |
SMART | SM01019 | 6.3E-17 | 290 | 387 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.084 | 290 | 387 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-17 | 292 | 386 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
METKACTVCS MNCLKLHGDE DEDADRNKRM LDSSRGRKKD AASHLLPSFL KKMTEVAIKS 60 KLQMPVSFVR NSVTRIGKTI ILEGPSTNKW SVEVWPGSVQ KRSLEFRDGW QKFVKDHNLQ 120 IGDQLCFTLT SDSHFQVMVY DESGSQKASA MDAINSTVTI KHEPKHLSKV RSDVRTKGPE 180 ARLKQKVTKR IRIKSAVKPT VVVVHSSDSE LGNSEPPEKD ENLKEIISKE KIQDCPGMDG 240 SLADPKPLLA PHILQGGHVV SQRRSVTPAE KERALNAARD LADTLTNPKL VMVMTKAYVY 300 KGFWMVLNKV FSNAHMPHES REVTLCNKAG HSWPVKWLFK TTTNSSGFSG GWRGFALDNR 360 LEESDVCVFE MVDEKYFVIL VHLFRAIGQP SEDAGDYRPS PGRGRNANRR KRKAIDSPLD 420 TRCTKIKLFH SGDLKSPAGC SRAKYLYHTQ SQEAENLAQM VGCSQKQQKD TCTASHGKVL 480 HQDEGKEVTS TAITSSCDTD FTSDNPSSEA LETFERRTAL QIRPLHAFQF PRRKTGSFRD 540 YLMDLGKELV GQQAAMAAPK RSSPPASRKT QISPSLEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-17 | 261 | 385 | 22 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-17 | 261 | 385 | 22 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400344.1 | 0.0 | B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A2K1J449 | 0.0 | A0A2K1J449_PHYPA; Uncharacterized protein | ||||
STRING | PP1S434_19V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-24 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_16170V3.2.p |
Entrez Gene | 5948217 |
Publications ? help Back to Top | |||
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