PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_16150V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 392aa MW: 43875.1 Da PI: 8.5527 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.2 | 1.1e-16 | 136 | 225 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+ +++s++ + +l lp +f++e+ ++++ t++lede+ +We + k+ + l++GW++F ++ L +gD +vF+l++ ++f Pp3c17_16150V3.2.p 136 FVRGMLHSHTASGFWLGLPVSFCREYL--PHRDETIVLEDEKLLEWECVY--LAKK--IGLSGGWRGFSIDHSLVDGDACVFELVEPKRF- 219 566688999*****************5..346679***************..5665..44***********************9987777. PP .EEEEE- CS B3 92 lvvkvfr 98 ++++fr Pp3c17_16150V3.2.p 220 -KIHIFR 225 .888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-23 | 132 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 132 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.27E-23 | 134 | 225 | No hit | No description |
Pfam | PF02362 | 4.3E-15 | 136 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-19 | 136 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.901 | 136 | 227 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MAVVVSGQLV PYEETRKRRV EENKRRMEEL GLFDFSNSFV KNQPMRRKSV RRKTLSPEEV 60 ATEARRSPRF AGKPVVEHED VEIHKQRRGL SRSGLHARCG TVYRQLAGRR DVPESTRQAA 120 LDAAEVVYKA LKNPGFVRGM LHSHTASGFW LGLPVSFCRE YLPHRDETIV LEDEKLLEWE 180 CVYLAKKIGL SGGWRGFSID HSLVDGDACV FELVEPKRFK IHIFRCDNCE GSEVEDGSVG 240 GNVSDSDALP KNKVSEDGDN NSPVAATSSE PRPRKLDEEY GEETDASTEA CKSLKREAGA 300 DVAHSLRSSK HRRVKEENND STYSIATRST RSKRKNDDNA NGIVVEIVGA CADEDYVKDA 360 RKPAAQNKTH QTEILSFGRI TRNSTARSLK K* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12168 | 1e-169 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400185.1 | 0.0 | B3 domain-containing protein Os03g0184500-like | ||||
TrEMBL | A0A2K1J456 | 0.0 | A0A2K1J456_PHYPA; Uncharacterized protein | ||||
STRING | PP1S434_17V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-45 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_16150V3.2.p |