PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_16150V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 392aa    MW: 43875.1 Da    PI: 8.5527
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_16150V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16136225198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+  +++s++ +  +l lp +f++e+   ++++ t++lede+  +We  +    k+  + l++GW++F  ++ L +gD +vF+l++ ++f 
  Pp3c17_16150V3.1.p 136 FVRGMLHSHTASGFWLGLPVSFCREYL--PHRDETIVLEDEKLLEWECVY--LAKK--IGLSGGWRGFSIDHSLVDGDACVFELVEPKRF- 219
                         566688999*****************5..346679***************..5665..44***********************9987777. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          ++++fr
  Pp3c17_16150V3.1.p 220 -KIHIFR 225
                         .888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-23132229IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-19132227IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-23134225No hitNo description
PfamPF023624.3E-15136225IPR003340B3 DNA binding domain
SMARTSM010191.0E-19136227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901136227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAVVVSGQLV PYEETRKRRV EENKRRMEEL GLFDFSNSFV KNQPMRRKSV RRKTLSPEEV  60
ATEARRSPRF AGKPVVEHED VEIHKQRRGL SRSGLHARCG TVYRQLAGRR DVPESTRQAA  120
LDAAEVVYKA LKNPGFVRGM LHSHTASGFW LGLPVSFCRE YLPHRDETIV LEDEKLLEWE  180
CVYLAKKIGL SGGWRGFSID HSLVDGDACV FELVEPKRFK IHIFRCDNCE GSEVEDGSVG  240
GNVSDSDALP KNKVSEDGDN NSPVAATSSE PRPRKLDEEY GEETDASTEA CKSLKREAGA  300
DVAHSLRSSK HRRVKEENND STYSIATRST RSKRKNDDNA NGIVVEIVGA CADEDYVKDA  360
RKPAAQNKTH QTEILSFGRI TRNSTARSLK K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.121681e-169protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400185.10.0B3 domain-containing protein Os03g0184500-like
TrEMBLA0A2K1J4560.0A0A2K1J456_PHYPA; Uncharacterized protein
STRINGPP1S434_17V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-45B3 family protein