PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_14230V3.3.p | ||||||||
Common Name | PHYPADRAFT_165882 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | DBB | ||||||||
Protein Properties | Length: 337aa MW: 35791.4 Da PI: 6.6099 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.7 | 7.4e-06 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e++++ C ++ lC +C + H H +vp Pp3c17_14230V3.3.p 4 QCDVCEKNKAAVMCCADEAALCTSCDTRVHAAnklankHVRVP 46 7******99*********************6577888887777 PP | |||||||
2 | zf-B_box | 32.9 | 1.3e-10 | 52 | 94 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 e+++C+ ++ek+ +fC +++ llC+dC +++H+ H+ Pp3c17_14230V3.3.p 52 EPPRCDICQEKPGFFFCLEDRALLCRDCDVSIHSAnklssnHQ 94 579******************************6556666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 9.4E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.983 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.51E-8 | 3 | 47 | No hit | No description |
SuperFamily | SSF57845 | 2.23E-5 | 47 | 89 | No hit | No description |
SMART | SM00336 | 4.8E-19 | 51 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.229 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.9E-9 | 53 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.14E-12 | 54 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MRVQCDVCEK NKAAVMCCAD EAALCTSCDT RVHAANKLAN KHVRVPLVGQ LEPPRCDICQ 60 EKPGFFFCLE DRALLCRDCD VSIHSANKLS SNHQRFLLTG TRVGLDSISG QEGAEVVLEE 120 SPRVPTPSTA TSTLPSISKS TLSSGSKLKD NSQPVPANAT PTPNPSWLTN GGRNSERAKI 180 KSKPVGTTSA NVSDPHGSSF GKRNSIPADF LSDAVPVWGV DELLNLPELA EGYHIGDIGS 240 SKADMNNLGD YDWMADLSMF EEQMYAAGSF HEVPQLSAPA PTVGLTRGGR ATALSKGKGK 300 QDAAIVPQFD DAFVVPDLGL SVSPSSPAPV TKRRRT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.5256 | 0.0 | gametophore| protonema| sporophyte |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401288.1 | 0.0 | B-box zinc finger protein 24-like | ||||
Refseq | XP_024401289.1 | 0.0 | B-box zinc finger protein 24-like | ||||
TrEMBL | A9SNT6 | 0.0 | A9SNT6_PHYPA; Predicted protein | ||||
STRING | PP1S98_84V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 6e-48 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_14230V3.3.p |
Entrez Gene | 5931144 |
Publications ? help Back to Top | |||
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