PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_13620V3.1.p | ||||||||
Common Name | PHYPADRAFT_81770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 352aa MW: 40116.9 Da PI: 4.1582 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 28 | 50 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cg +F++ +L H+++H Pp3c17_13620V3.1.p 28 YMCKVCGNHFNSGQSLGGHMNVH 50 89*******************99 PP | |||||||
2 | AP2 | 52.7 | 1.1e-16 | 84 | 133 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 +++kGVr++k ++rWvAeIr p+ + k+++lg++ t+ eAa a++ a k++ Pp3c17_13620V3.1.p 84 TQFKGVRYRKEQNRWVAEIRPPR----SsKTWWLGTYSTPTEAAYAYDVAIKYF 133 579******************84....35********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.96E-6 | 25 | 54 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.6E-4 | 27 | 53 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.8E-7 | 28 | 51 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.531 | 28 | 55 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
CDD | cd00018 | 1.00E-16 | 84 | 142 | No hit | No description |
PROSITE profile | PS51032 | 15.369 | 85 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-11 | 85 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-16 | 85 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-14 | 85 | 142 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-18 | 85 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MARMFNSSDN YGYSSSDCPS SNSHRRTYMC KVCGNHFNSG QSLGGHMNVH RNDRRSPSNC 60 QYNRSKGSPT YSSPGAGSGD ECSTQFKGVR YRKEQNRWVA EIRPPRSSKT WWLGTYSTPT 120 EAAYAYDVAI KYFGSETSLN FDGHPVYDQI PTISTTMPKD FAMQLREVVK KYGKLAMQSD 180 GSGRASFSFG NAYNPYETYP PPYTCASNDV DSDDGEDDEE EEEEEEQEEQ EEMEEEVEQE 240 DEGQPVQEEE NWENYVNFPR NQTTEQSLDD HAPIDNEQTP TSIFDAADLN AFNGASYPPQ 300 HSSFTMDYDL STYNYCFSPP QHPFLSDYDY NCGTYQPQAQ FWSQSYQYSS Y* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400289.1 | 0.0 | ethylene-responsive transcription factor ERF114-like | ||||
TrEMBL | A0A2K1J3T1 | 0.0 | A0A2K1J3T1_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9SNQ1 | 0.0 | A9SNQ1_PHYPA; Predicted protein | ||||
STRING | PP1S98_22V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 7e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_13620V3.1.p |
Entrez Gene | 5931109 |
Publications ? help Back to Top | |||
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