PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_12880V3.6.p | ||||||||
Common Name | PHYPADRAFT_171843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 680aa MW: 76661.7 Da PI: 7.1582 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.6 | 1.4e-10 | 50 | 129 | 14 | 98 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + l lp f+++h + + +ltl+ ++g +W l ++ s++++++ GW+e + + +L+++D vvF l ++s f +++vf+ Pp3c17_12880V3.6.p 50 CKLELPTVFLDHHiK---SLKEKLTLQGPDGHRWPAMLGMTLDSKTCIMQ-GWQEVAADYNLEVKDQVVFFLLNDSHF--MIQVFD 129 678899****88842...34558***************888888888888.********************9999999..999997 PP | |||||||
2 | B3 | 37.6 | 3.8e-12 | 538 | 615 | 6 | 84 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 ++ v l +pk+ +++ +++ ++++l+l d++gr+W v+ + ++++ + +kGW +Fv +++L+egD +vF l Pp3c17_12880V3.6.p 538 KKTQVYCGFHLKVPKEMVDALQLP-LKTMELMLCDSTGRKWLVEW-MGAHPKHpGINSKGWTRFVLEHHLEEGDCCVFDL 615 5556666677999*****999877.6899****************.455555545678********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-14 | 30 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-16 | 31 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.47E-13 | 32 | 129 | No hit | No description |
SMART | SM01019 | 0.0027 | 34 | 131 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.01 | 37 | 131 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-8 | 50 | 129 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.28E-16 | 528 | 625 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-15 | 528 | 628 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-13 | 531 | 629 | No hit | No description |
SMART | SM01019 | 0.0017 | 533 | 631 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.814 | 533 | 631 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-10 | 540 | 616 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MEKATSYNLQ QREDAGLWKE LLRTARQGTT NKSFFVVDVV GSCLHTAMFC KLELPTVFLD 60 HHIKSLKEKL TLQGPDGHRW PAMLGMTLDS KTCIMQGWQE VAADYNLEVK DQVVFFLLND 120 SHFMIQVFDD ENNVKLRVLP STDREAQSNG DFSKARSKQL TRELAEKAKT DVRASAQEED 180 SADLPLLRHS TVDGNEVLHI PDSSEDEEHV PSQHRNLDDG GKVNAVSPIA TSVLKIRPEK 240 NHTRCNSEVT KVDAEDRTGT TPEDMDLQIL VPLREPAEME LRKNLRRISG VDDDDDNDND 300 VQNERNSSII ENLTGNQATR RSIPVSSEPS SSELVITRSR SRKLQRKTGG YKDDNDLYTS 360 STVRKLGCEE QVFNGEKADS GCNREKRLTQ RRSLGMKKML EMPPVRAVKE PSSNLDLGTS 420 EVMLQENVES RVIHPAAPRT LRELRRKTLA KSRNNGKVSE DSGEKKAANV DPPEDVVKPV 480 YKRPKPMKIG GMAPPKEPPI LYISKRRPVT DKERQQALIT AQEFANMSKN KHYVMQLKKT 540 QVYCGFHLKV PKEMVDALQL PLKTMELMLC DSTGRKWLVE WMGAHPKHPG INSKGWTRFV 600 LEHHLEEGDC CVFDLPDPWV SNISVQIFPV VPLVESSENG WRDHYIFAQQ GVQKEMGSPS 660 GRSPAQNYAS HAQAWANST* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2841 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401452.1 | 0.0 | uncharacterized protein LOC112294814 isoform X1 | ||||
Refseq | XP_024401453.1 | 0.0 | uncharacterized protein LOC112294814 isoform X1 | ||||
Refseq | XP_024401454.1 | 0.0 | uncharacterized protein LOC112294814 isoform X1 | ||||
Refseq | XP_024401455.1 | 0.0 | uncharacterized protein LOC112294814 isoform X1 | ||||
Refseq | XP_024401456.1 | 0.0 | uncharacterized protein LOC112294814 isoform X1 | ||||
TrEMBL | A0A2K1J3N0 | 0.0 | A0A2K1J3N0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S313_64V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_12880V3.6.p |
Entrez Gene | 5945059 |
Publications ? help Back to Top | |||
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