PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_12880V3.6.p
Common NamePHYPADRAFT_171843
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 680aa    MW: 76661.7 Da    PI: 7.1582
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_12880V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.4e-10501291498
                         T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         + l lp  f+++h +     + +ltl+ ++g +W   l ++  s++++++ GW+e + + +L+++D vvF l ++s f  +++vf+
  Pp3c17_12880V3.6.p  50 CKLELPTVFLDHHiK---SLKEKLTLQGPDGHRWPAMLGMTLDSKTCIMQ-GWQEVAADYNLEVKDQVVFFLLNDSHF--MIQVFD 129
                         678899****88842...34558***************888888888888.********************9999999..999997 PP
2B337.63.8e-12538615684
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 
                         ++  v     l +pk+ +++ +++  ++++l+l d++gr+W v+  +  ++++  + +kGW +Fv +++L+egD +vF l
  Pp3c17_12880V3.6.p 538 KKTQVYCGFHLKVPKEMVDALQLP-LKTMELMLCDSTGRKWLVEW-MGAHPKHpGINSKGWTRFVLEHHLEEGDCCVFDL 615
                         5556666677999*****999877.6899****************.455555545678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-1430130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-1631129IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-1332129No hitNo description
SMARTSM010190.002734131IPR003340B3 DNA binding domain
PROSITE profilePS5086310.0137131IPR003340B3 DNA binding domain
PfamPF023623.2E-850129IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-16528625IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-15528628IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-13531629No hitNo description
SMARTSM010190.0017533631IPR003340B3 DNA binding domain
PROSITE profilePS5086310.814533631IPR003340B3 DNA binding domain
PfamPF023627.3E-10540616IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MEKATSYNLQ QREDAGLWKE LLRTARQGTT NKSFFVVDVV GSCLHTAMFC KLELPTVFLD  60
HHIKSLKEKL TLQGPDGHRW PAMLGMTLDS KTCIMQGWQE VAADYNLEVK DQVVFFLLND  120
SHFMIQVFDD ENNVKLRVLP STDREAQSNG DFSKARSKQL TRELAEKAKT DVRASAQEED  180
SADLPLLRHS TVDGNEVLHI PDSSEDEEHV PSQHRNLDDG GKVNAVSPIA TSVLKIRPEK  240
NHTRCNSEVT KVDAEDRTGT TPEDMDLQIL VPLREPAEME LRKNLRRISG VDDDDDNDND  300
VQNERNSSII ENLTGNQATR RSIPVSSEPS SSELVITRSR SRKLQRKTGG YKDDNDLYTS  360
STVRKLGCEE QVFNGEKADS GCNREKRLTQ RRSLGMKKML EMPPVRAVKE PSSNLDLGTS  420
EVMLQENVES RVIHPAAPRT LRELRRKTLA KSRNNGKVSE DSGEKKAANV DPPEDVVKPV  480
YKRPKPMKIG GMAPPKEPPI LYISKRRPVT DKERQQALIT AQEFANMSKN KHYVMQLKKT  540
QVYCGFHLKV PKEMVDALQL PLKTMELMLC DSTGRKWLVE WMGAHPKHPG INSKGWTRFV  600
LEHHLEEGDC CVFDLPDPWV SNISVQIFPV VPLVESSENG WRDHYIFAQQ GVQKEMGSPS  660
GRSPAQNYAS HAQAWANST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.28410.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401452.10.0uncharacterized protein LOC112294814 isoform X1
RefseqXP_024401453.10.0uncharacterized protein LOC112294814 isoform X1
RefseqXP_024401454.10.0uncharacterized protein LOC112294814 isoform X1
RefseqXP_024401455.10.0uncharacterized protein LOC112294814 isoform X1
RefseqXP_024401456.10.0uncharacterized protein LOC112294814 isoform X1
TrEMBLA0A2K1J3N00.0A0A2K1J3N0_PHYPA; Uncharacterized protein
STRINGPP1S313_64V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-07B3 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]