PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_12880V3.3.p | ||||||||
Common Name | PHYPADRAFT_171843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 677aa MW: 76388.5 Da PI: 7.2966 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.7 | 1.4e-10 | 50 | 129 | 14 | 98 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + l lp f+++h + + +ltl+ ++g +W l ++ s++++++ GW+e + + +L+++D vvF l ++s f +++vf+ Pp3c17_12880V3.3.p 50 CKLELPTVFLDHHiK---SLKEKLTLQGPDGHRWPAMLGMTLDSKTCIMQ-GWQEVAADYNLEVKDQVVFFLLNDSHF--MIQVFD 129 678899****88842...34558***************888888888888.********************9999999..999997 PP | |||||||
2 | B3 | 37.7 | 3.8e-12 | 535 | 612 | 6 | 84 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 ++ v l +pk+ +++ +++ ++++l+l d++gr+W v+ + ++++ + +kGW +Fv +++L+egD +vF l Pp3c17_12880V3.3.p 535 KKTQVYCGFHLKVPKEMVDALQLP-LKTMELMLCDSTGRKWLVEW-MGAHPKHpGINSKGWTRFVLEHHLEEGDCCVFDL 612 5556666677999*****999877.6899****************.455555545678********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.5E-14 | 30 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-16 | 31 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-13 | 32 | 129 | No hit | No description |
SMART | SM01019 | 0.0027 | 34 | 131 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.01 | 37 | 131 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-8 | 50 | 129 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.08E-16 | 525 | 622 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-15 | 525 | 625 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.91E-13 | 528 | 626 | No hit | No description |
SMART | SM01019 | 0.0017 | 530 | 628 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.814 | 530 | 628 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-10 | 537 | 613 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MEKATSYNLQ QREDAGLWKE LLRTARQGTT NKSFFVVDVV GSCLHTAMFC KLELPTVFLD 60 HHIKSLKEKL TLQGPDGHRW PAMLGMTLDS KTCIMQGWQE VAADYNLEVK DQVVFFLLND 120 SHFMIQVFDD ENNVKLRVLP STDREAQSNG DFSKARSKQL TRELAEKAKT DVRASAQEED 180 LPLLRHSTVD GNEVLHIPDS SEDEEHVPSQ HRNLDDGGKV NAVSPIATSV LKIRPEKNHT 240 RCNSEVTKVD AEDRTGTTPE DMDLQILVPL REPAEMELRK NLRRISGVDD DDDNDNDVQN 300 ERNSSIIENL TGNQATRRSI PVSSEPSSSE LVITRSRSRK LQRKTGGYKD DNDLYTSSTV 360 RKLGCEEQVF NGEKADSGCN REKRLTQRRS LGMKKMLEMP PVRAVKEPSS NLDLGTSEVM 420 LQENVESRVI HPAAPRTLRE LRRKTLAKSR NNGKVSEDSG EKKAANVDPP EDVVKPVYKR 480 PKPMKIGGMA PPKEPPILYI SKRRPVTDKE RQQALITAQE FANMSKNKHY VMQLKKTQVY 540 CGFHLKVPKE MVDALQLPLK TMELMLCDST GRKWLVEWMG AHPKHPGINS KGWTRFVLEH 600 HLEEGDCCVF DLPDPWVSNI SVQIFPVVPL VESSENGWRD HYIFAQQGVQ KEMGSPSGRS 660 PAQNYASHAQ AWANST* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2841 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401457.1 | 0.0 | uncharacterized protein LOC112294814 isoform X2 | ||||
TrEMBL | A0A2K1J3N0 | 0.0 | A0A2K1J3N0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S313_64V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_12880V3.3.p |
Entrez Gene | 5945059 |
Publications ? help Back to Top | |||
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