PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_11070V3.4.p
Common NamePHYPADRAFT_166219
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 524aa    MW: 56594.2 Da    PI: 9.4839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_11070V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-08288336255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++ h  rEr RRd++  +f  L +llP+ +      K + ++i+e  v+ +ksLq
  Pp3c17_11070V3.4.p 288 KVEHIVRERWRRDDMAGKFLALESLLPPgL------KRDRSTIVEDSVNLVKSLQ 336
                         56799***********************77......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.782286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-10288353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9288355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-5288336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-7288340No hitNo description
SMARTSM003531.3E-6292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MLEVMDKHYH SSSMPQGPAS LAEPSPPVTM DFSCDNAYHS FTPSGCNVFS SAWSQTLPEL  60
DIDNNMHTLF EGLPEIVEPD LVGRDEGGCK CSNVTLSPFF PSTPPAHAGR LSSMPYMIGA  120
VTPAIPALDA RSSVSHLAGD AAKAPLLLRP KPQELTQPVN EAADLKGGRS CKGKAAPVRS  180
KLSETKKPYN QSSVKKAMEA IPATIQAISQ VQVQGIPLTS AASSNFQRIL PATSAVTDMT  240
TVKANQCTPL RYGVGLGPQV LLHPAKRSRK DAAQAANTRT QKTRYFDKVE HIVRERWRRD  300
DMAGKFLALE SLLPPGLKRD RSTIVEDSVN LVKSLQHRKQ EVLKRRSELR SAVASGGLPP  360
TPGVKLNKFI KTIGSPAVIP ANSLQALESG SLSSSSMALS SGHLTVGTKS PLQVQPNDYG  420
AVFQIPKPLI NCVKRFYVQS ELALGDIVIE MICHQIPNFH SLLMKSMESL CLEVVRCSVT  480
RTVNQLICNL AVKPFPSSTA GRLSSTNIME ALNLVFRTPY PEP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.37360.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401290.10.0uncharacterized protein LOC112294746
RefseqXP_024401292.10.0uncharacterized protein LOC112294746
RefseqXP_024401293.10.0uncharacterized protein LOC112294746
TrEMBLA0A2K1J3G20.0A0A2K1J3G2_PHYPA; Uncharacterized protein
STRINGPP1S105_81V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-08bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]