PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_11070V3.3.p | ||||||||
Common Name | PHYPADRAFT_166219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 524aa MW: 56594.2 Da PI: 9.4839 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.5 | 4.8e-08 | 288 | 336 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ h rEr RRd++ +f L +llP+ + K + ++i+e v+ +ksLq Pp3c17_11070V3.3.p 288 KVEHIVRERWRRDDMAGKFLALESLLPPgL------KRDRSTIVEDSVNLVKSLQ 336 56799***********************77......9*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.782 | 286 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-10 | 288 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-9 | 288 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-5 | 288 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-7 | 288 | 340 | No hit | No description |
SMART | SM00353 | 1.3E-6 | 292 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MLEVMDKHYH SSSMPQGPAS LAEPSPPVTM DFSCDNAYHS FTPSGCNVFS SAWSQTLPEL 60 DIDNNMHTLF EGLPEIVEPD LVGRDEGGCK CSNVTLSPFF PSTPPAHAGR LSSMPYMIGA 120 VTPAIPALDA RSSVSHLAGD AAKAPLLLRP KPQELTQPVN EAADLKGGRS CKGKAAPVRS 180 KLSETKKPYN QSSVKKAMEA IPATIQAISQ VQVQGIPLTS AASSNFQRIL PATSAVTDMT 240 TVKANQCTPL RYGVGLGPQV LLHPAKRSRK DAAQAANTRT QKTRYFDKVE HIVRERWRRD 300 DMAGKFLALE SLLPPGLKRD RSTIVEDSVN LVKSLQHRKQ EVLKRRSELR SAVASGGLPP 360 TPGVKLNKFI KTIGSPAVIP ANSLQALESG SLSSSSMALS SGHLTVGTKS PLQVQPNDYG 420 AVFQIPKPLI NCVKRFYVQS ELALGDIVIE MICHQIPNFH SLLMKSMESL CLEVVRCSVT 480 RTVNQLICNL AVKPFPSSTA GRLSSTNIME ALNLVFRTPY PEP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3736 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024401290.1 | 0.0 | uncharacterized protein LOC112294746 | ||||
Refseq | XP_024401292.1 | 0.0 | uncharacterized protein LOC112294746 | ||||
Refseq | XP_024401293.1 | 0.0 | uncharacterized protein LOC112294746 | ||||
TrEMBL | A0A2K1J3G2 | 0.0 | A0A2K1J3G2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S105_81V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 1e-08 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_11070V3.3.p |
Entrez Gene | 5931918 |
Publications ? help Back to Top | |||
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