PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_11050V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 477aa    MW: 54014.9 Da    PI: 8.6098
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_11050V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.85.2e-12138223186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+ + v + +++++e+  ++ rg+ + ++We+  ++  +e+g  +s kqC++k+++l+kr+k +k ++ +    ++ ++++f++++
  Pp3c17_11050V3.4.p 138 EWSARSVALFLDLYEEKYFEMDRGSFRSKDWEQLVDRFnMEGGGGKSVKQCRDKMDSLKKRHKLEKGRKAST-GAETCSWVWFQKMD 223
                         5*******************************9766665***************************999995.666679******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.5E-5135198IPR001005SANT/Myb domain
PfamPF138373.3E-15136224No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MSGGGSQHRA ESRHASAEPS SFTARAAIAA VVCWSSDLAI GKDSYRESRI EGDWRGIVRV  60
GAVDWYFRVA IALQIRPKRS IWAEKICGVT FLAMDGDRSQ TPVSLPPPMK MLSTTSLQSS  120
ETEKKPSVAR NGDEKREEWS ARSVALFLDL YEEKYFEMDR GSFRSKDWEQ LVDRFNMEGG  180
GGKSVKQCRD KMDSLKKRHK LEKGRKASTG AETCSWVWFQ KMDGMFGDHP KHQSVLLGPP  240
DAVDMKFPAD KFRITGGENV VIEEEESRRL VGSWREAKKI LQELPLSAEE RGKARTLLLE  300
KKEEERLEYF EGDFEEVSHC LKLLVERASG HPTGMAGLVQ MDFATASDIQ RRLEEVLTDG  360
RHQICGISCL QLKIVEAEEI LYLKQTLCFI LRTRLRDLIL QLVSGNLAFR QLCSEGIYQV  420
KFGRLAESDG TMSARSFKRI LRISLLKHNP KPDLYNTTGS TVFSLYDVPL RIRFLQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.5640.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400336.10.0uncharacterized protein LOC112294274
TrEMBLA0A2K1J3F70.0A0A2K1J3F7_PHYPA; Uncharacterized protein
TrEMBLA9SQT80.0A9SQT8_PHYPA; Predicted protein
STRINGPP1S105_83V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1163547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.24e-20Trihelix family protein