PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_10200V3.2.p

Common Name

PHYPADRAFT_230424

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 428aa MW: 47429.2 Da PI: 7.4474

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_10200V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	224	268	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RRd++ ++f L ++lP+a +K + a++ + ++Y+k+L Pp3c17_10200V3.2.p 224 HIIRERQRRDDMTNKFLLLESILPPA-----PKRDRATVIKDSIQYVKNL 268 899********************9.....7**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.163	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.33E-13	221	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-12	223	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	224	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.08E-8	224	273	No hit	No description
SMART	SM00353	1.8E-6	225	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MESTPHRGGV PDPNDVNLLS RSFSMDFASM LESTDGVLHQ QIDEYLQGPA DHHQFNHDDG 60 TGFSIPYSEP LSFAAASPPF QSIMSVETLQ GSNVMKQSLG RNSHHCGPEI QSKIQYVQML 120 PISIGAANLC APHQQIHDMG FLEPSSFERE LQAPAQPDMF YHCSSEPGAV IPGEVSGYEQ 180 SCSPDNFRGT TCESIGPQSE LGAGNLFQKD QVVKGKRPTD AVGHIIRERQ RRDDMTNKFL 240 LLESILPPAP KRDRATVIKD SIQYVKNLRH RVKNLHQKRS QMRSKLTNVS FLSPTAIMQK 300 KNEKKLLTPT NSQALLQTSV ASDDIVSCPI HSDEMGKTTD IEKVKVHVDL PHQVVIEMTC 360 RQQPRVQIRL LKTLESMGLD VSRCSVSKIR SHLLFSIIVK PRMMAEPPLT SKDIVQALKL 420 AVAPADL*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MESTPHRGGV PDPNDVNLLS RSFSMDFASM LESTDGVLHQ QIDEYLQGPA DHHQFNHDDG  60
TGFSIPYSEP LSFAAASPPF QSIMSVETLQ GSNVMKQSLG RNSHHCGPEI QSKIQYVQML  120
PISIGAANLC APHQQIHDMG FLEPSSFERE LQAPAQPDMF YHCSSEPGAV IPGEVSGYEQ  180
SCSPDNFRGT TCESIGPQSE LGAGNLFQKD QVVKGKRPTD AVGHIIRERQ RRDDMTNKFL  240
LLESILPPAP KRDRATVIKD SIQYVKNLRH RVKNLHQKRS QMRSKLTNVS FLSPTAIMQK  300
KNEKKLLTPT NSQALLQTSV ASDDIVSCPI HSDEMGKTTD IEKVKVHVDL PHQVVIEMTC  360
RQQPRVQIRL LKTLESMGLD VSRCSVSKIR SHLLFSIIVK PRMMAEPPLT SKDIVQALKL  420
AVAPADL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400112.1	0.0	transcription factor MYC2-like
TrEMBL	A0A2K1J3D4	0.0	A0A2K1J3D4_PHYPA; Uncharacterized protein
STRING	PP1S105_201V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.3	3e-12	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c17_10200V3.2.p
Entrez Gene	5931975

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]