PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c17_10170V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 34895.8 Da PI: 8.3947 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ ++r++lg+f+tae+Aa+a++ a+++l+g Pp3c17_10170V3.2.p 20 HFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDTAEGAARAYDTAARALRG 69 69*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-21 | 20 | 77 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-37 | 20 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.71E-31 | 20 | 76 | No hit | No description |
Pfam | PF00847 | 6.9E-12 | 20 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 20 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MTSREEKEIT KGNQTDLGVH FRGVRKRPWG RFAAEIRDPW KKTRVWLGTF DTAEGAARAY 60 DTAARALRGS KAKTNFTCPL SSEDQSTSQS STLESWSTSP TSSHNVHHPY RQYQHLLPKQ 120 QHPNCGSSAA LDTASWRSCL DLNLSAMAPI DHHVQTQDIA QAQNMRINVG HSYVSRGEVA 180 EVAHSTKRPS STPIQTLFQE SLISLKKPLI HSVPAVDVSV SQVEWSLGNS SDRNGTIVTG 240 SVTTPEMRTS SSDCDSSSSV ILNTESPETK PTSRGSSILL DLNFPPCHDE QSAVTAADNF 300 CLSRPRITAF FLKSTGRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 18 | 82 | 3 | 68 | ATERF1 |
3gcc_A | 3e-21 | 18 | 82 | 3 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.845 | 0.0 | gametophore| protonema| sporophyte |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024399983.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A2K1J3D2 | 0.0 | A0A2K1J3D2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S105_212V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 2e-21 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c17_10170V3.2.p |