PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_6810V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 152aa MW: 17819.4 Da PI: 10.933 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 30.1 | 1e-09 | 29 | 67 | 4 | 45 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGa 45 ++++c rC st+ kf y nn +qPry C++Cr +G + Pp3c16_6810V3.1.p 29 RSKACQRCGSTDVKFKYLNN--KKQPRYECRTCRN-GVRGSS 67 5679***************8..58*********85.345555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.5E-9 | 30 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MESPSTSRRP TEARPRNREA QEPEEFANRS KACQRCGSTD VKFKYLNNKK QPRYECRTCR 60 NGVRGSSLFN PFPMRPLHRK GYLKIPALQT MEFMVQVKVC PRCKSSTHVR FLDHNNKSPK 120 HPQYRFREWK LDFSPFSPFK LRVTGSQKGH E* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1J7G7 | 1e-108 | A0A2K1J7G7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S341_82V6.1 | 1e-109 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_6810V3.1.p |