PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_6460V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 370aa MW: 40519.5 Da PI: 5.4171 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.3 | 3e-37 | 30 | 86 | 4 | 60 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k l+cprC+s+ntkfCyynny+++qPr+fC++C+ryWt GG+lrnvPvGgg+rk+ + Pp3c16_6460V3.2.p 30 KVLPCPRCQSMNTKFCYYNNYNVNQPRHFCRNCQRYWTVGGTLRNVPVGGGSRKKLR 86 7789**************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-26 | 26 | 83 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.8E-32 | 31 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.63 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 34 | 70 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MADSGLGSGE GDSPVQSKGN GGAIREKPVK VLPCPRCQSM NTKFCYYNNY NVNQPRHFCR 60 NCQRYWTVGG TLRNVPVGGG SRKKLRMARS RTDPYLRAGE APQTGPLSSM SGADGLLGAS 120 TCVQQLPMLP STPGLVCFGT QLSGFAPAGS QLPFVQTALE QSQSMYTRVQ QKPLAGLQEV 180 PDLQSVYDVP QVPQFPQVGS ELLNMSSLMM DDGFFKMPGD LHLPSDSEAL ASVITKADLW 240 SNPMQQLSSL NGSTWEDSRP SKSSFTSQLQ NLSGYEDRRN PMNQVNVNMF LPNTKPQFWG 300 SAIMNQKSLM DDRLVPHTSW DENQSTQTSL SPTESSSLEE ERSLPNYFSS QYEDVPQSWA 360 GLLASDILF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3282 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024399170.1 | 0.0 | uncharacterized protein LOC112293691 | ||||
TrEMBL | A0A2K1J7E4 | 0.0 | A0A2K1J7E4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S341_43V6.3 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 4e-33 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_6460V3.2.p |