PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c16_4710V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 523aa MW: 56622.6 Da PI: 8.2679 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2.1e-18 | 311 | 360 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr ++ +grW AeIrd r r++lg+f+tae+Aa+a++ a+++l+g+ Pp3c16_4710V3.2.p 311 FRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDSAARALRGA 360 8*******.**********32....25*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.509 | 310 | 367 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-28 | 310 | 366 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-31 | 310 | 373 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 311 | 322 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-20 | 311 | 368 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.73E-29 | 311 | 366 | No hit | No description |
Pfam | PF00847 | 2.7E-12 | 311 | 359 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 333 | 349 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MALHDMLKGS GISAKCKWRD VAPEVPRKNT TSDRSRDSRS QNETRTWMAC HRCSGPAFNT 60 LCDRCLSPCA SSMDTLNFLL EGAISFRGGE ICRSNNLPDV SESFGAYNTN FDSGQVEGGD 120 DRQFSPDSPV VDTLGISITP DCSKQQDLDG IAAVVGKSVL FGSTHSLEGR ISRSLDMSLT 180 LAPPSLWKHS FPHALQSRVL NTLPSRTDNT LSLNVESGGS HRADSCTSEQ TRSSPTDFRA 240 TSDHLHNQDI SKLSSQLHEV RRTISIDNDF IGLGSSMGVI VGQPAKSSSG TSTSAKRIAR 300 AEASGATGRS FRGVRKRPWG RWSAEIRDRI GRCRHWLGTF DTAEDAARAY DSAARALRGA 360 KAKTNFGVDH SGSKSHIHNA FPSYSRAERT STSSSPQHRS LRLSSSLPLN QYSSGIATVL 420 SVNIGNQTRR ASEVLSNSQP AAVLIRAEIQ ESVPENCAMT MLPNADPKLD FCSPRSCSSR 480 ESTQESTATY QSPEHSDFFS TSGFYSGFSS DLTPIPMSSS WQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 305 | 366 | 9 | 71 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398378.1 | 0.0 | uncharacterized protein LOC112293327 | ||||
TrEMBL | A0A2K1J765 | 0.0 | A0A2K1J765_PHYPA; Uncharacterized protein | ||||
STRING | PP1S15_480V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 7e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c16_4710V3.2.p |